Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1754 183 4e-41 seq347 93.3 5e-14 >seq1754 Length=2404786 Score = 183 bits (202), Expect = 4e-41 Identities = 517/785 (66%), Gaps = 13/785 (2%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 |||||| || || || | || ||||| || || ||||| || ||||| || | || || Sbjct 89009 GATGGCTGCCTGCACGGCGGCTCCGTACGCCACGGCCTCGTCAGGGTTGATGGACTTGTT 89068 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 ||| || || ||||| || || | | | | || || || || || || || || Sbjct 89069 CAGCTCCTTGCCGTTGAAGAAACCTTGGAGGAGCTTCTGGATCTTGGGAATGCGGGTGGA 89128 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||| || |||| || | | || || || || ||||| | ||| || || | Sbjct 89129 GCCTCCGACTAAGACGACCTCGTGGATCTTGGACTTGTCCATCTTGGCGTCGCGGAGGGC 89188 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || |||| | |||||||| ||| |||||| |||||||| | || Sbjct 89189 CTTCTCCACGGGCTCCAGAGTGCCACGGAACAGGTCAGCACACAGCTCCTCAAACCTGGC 89248 Query 7261 ACGGGTAATGGATGTA-TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 |||| | | || | | ||| || | || |||| | || || || || ||| || Sbjct 89249 CCGGGACA-GTTTGGAGTTGAAGTCGATCCCTTCGTGCAGAGAGTCGATCTCGATGACTG 89307 Query 7320 --TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 | ||||| | || || | ||| | ||| || ||||| |||||||||| | || || Sbjct 89308 CCTCTGTGCTG--GACGACAGCGTCCTCTTGGCCCGCTCGCACGCCGTTCTCAGCCGGCG 89365 Query 7378 AAGGGCACGCGGGTT--ACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG 7435 | ||| |||||||| |||| || | | ||||| | || || || ||||| || | Sbjct 89366 GATGGCCCGCGGGTTGGACCGCAAGT--CCTTCTTGTACTTGCGCTTGAACTCGTCGACG 89423 Query 7436 AAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||||| | || ||| ||||| ||||| || |||| ||| || || || || || Sbjct 89424 AAGTGGTTGACGACTCTGTTGTCGAAGTCTTCCCCTCCCAGGTGGGTGTCGCCGGCCGTG 89483 Query 7496 GCTTTGACTTCAAAGA--TACCTC-CTTCAATGTTTAACAACGAAACATCAAACGTACCA 7552 || || || || | | || | | || ||| | | | || || || ||||| || Sbjct 89484 GCGCGCACCTCGAACAGCTGCCCCTCGTCGATGGTCAGGATGGACACGTCGAACGTCCCG 89543 Query 7553 CCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTAC 7612 || |||||||| | || || |||||| | || || |||||| || || || || Sbjct 89544 CCGCCCAGGTCGTAGATCAGGACGTTCTTCTCCCCGCTCAGGTTCTTGTCCAGCCCATAA 89603 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 || | || || ||||| ||||| || || || | || |||||| || || || Sbjct 89604 GCCAGCGCGGCTGCCGTCGGTTCGTTGATGATCCTCAGCACGTTCAGCCCGGCGATCAAG 89663 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | || ||||| || || || || ||||| ||||||||||| || ||||| || | ||| Sbjct 89664 CCGGCGTCTTTGGTAGCCTGGCGCTGCGAGTCGTTAAAGTAAGCGGGGACGGTGATGACG 89723 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 ||||| ||| || || || || | ||||| | || ||||| || || || ||| Sbjct 89724 GCGTCTCGGACGGGCTGGCCCAGGTAAGCCTCCGCCGTCTCCTTCATCTTAGTCAGCACC 89783 Query 7793 ATCGA 7797 || || Sbjct 89784 ATGGA 89788 >seq347 Length=828048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || ||||||||||| || || || |||||||| || || || || || | Sbjct 457728 TTCTTGTCCAGTCCGTACGCGATGGCGGCAGCGGTTGGTTCGTTGATGATTCGCAGGACG 457787 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||| | ||| || | ||||| || || || || || || || ||||| |||||| Sbjct 457788 TTCATGCCGGAAATGGTCCCAGCATCCTTTGTGGCCTGCCGCTGAGAGTCGTTGAAGTAG 457847 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || || || || || || |||| ||| || Sbjct 457848 GCGGGAACGGTGACCACGGCGTTCGTCAC 457876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114476418720