Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1648 98.7 1e-15 >seq1648 Length=77580 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||| ||||| ||| | ||||| || || ||| ||||||||||||||| ||||| Sbjct 8312 GGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCC 8371 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 |||||| || || || ||||| | ||| |||| || ||| |||||||| |||||||||| Sbjct 8372 TGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCA-AATGACCCTGAGAAGAAGA 8430 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCA 117450 |||||||| || || || | || ||||| ||||| | | | |||| || | Sbjct 8431 CTCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTG-GTGTCTTTACTGGCG 8489 Query 117451 AACCATTTCATTGCCCATTTCGCCTTC 117477 | ||| | || ||||| | ||||||| Sbjct 8490 ATCCACTGCAGCGCCCAGTCCGCCTTC 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963779053920