Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1456 161 2e-34 seq317 156 9e-33 seq1001 138 3e-27 >seq1456 Length=293654 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 120084 ACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 120025 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || |||||||| || ||||| || |||||||| Sbjct 120024 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 119965 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| || || |||||||| || | ||||| Sbjct 119964 ATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACTTCAAGAGTGATGGTCTTG 119905 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||| | ||||| Sbjct 119904 CCTGTGAGGGTTTTGACGAAAATCTGCAT 119876 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||||||||| || || ||||| || | || || | |||||||| Sbjct 120312 ACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 120253 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 120252 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 120193 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || ||||| || ||||| | ||||| Sbjct 120192 ATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTC 120133 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 120132 CCTGTCAGGGTCTTCACAAAGATCTGCAT 120104 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 119173 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119114 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || |||||||| || ||||| || |||||||| Sbjct 119113 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 119054 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| |||||||| || || || |||||||| | ||||| Sbjct 119053 ATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTG 118994 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| || || | ||||| Sbjct 118993 CCAGTCAGGGTTTTCACAAAGATCTGCAT 118965 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 119856 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119797 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || |||||||| || ||||| || |||||||| Sbjct 119796 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 119737 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| |||||||| || || ||||||||||| | ||||| Sbjct 119736 ATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTG 119677 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || || || | ||||| Sbjct 119676 CCTGTGAGGGTCTTCACAAAGATCTGCAT 119648 Score = 143 bits (158), Expect = 6e-29 Identities = 160/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || |||||| ||| || || || ||||| |||| |||| || | |||||||| Sbjct 119400 ACAAG-TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCATCTTC 119343 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 119342 CAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 119283 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| || ||||| || || ||||||||||| | ||||| Sbjct 119282 GATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTT 119223 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||| | ||||| Sbjct 119222 GCCTGTGAGGGTTTTGACGAAGATCTGCAT 119193 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || || || ||||| |||| || || | |||||||| | ||| Sbjct 120535 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTG 120476 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || ||||||||||| || ||||| || |||||||| || || Sbjct 120475 TTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTT 120416 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| |||||||| || || || || ||||| | ||||| ||||| Sbjct 120415 GGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGTCTTGCCTGT 120356 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 120355 CAGGGTTTTGACGAAGATCTGCAT 120332 >seq317 Length=4125 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| || || || ||||| |||| || || | |||||||| Sbjct 1665 ACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 1606 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || || ||||||||||| || ||||| || |||||||| Sbjct 1605 AACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 1546 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| || |||||||| ||||| | ||||| Sbjct 1545 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGTCTTG 1486 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| ||||| ||||| | ||||| Sbjct 1485 CCTGTCAGGGTTTTAACGAAGATCTGCAT 1457 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || || ||||| || || || ||||| |||| || || | |||||||| Sbjct 1210 AACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 1151 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || ||||||||||| || ||||| || |||||||| Sbjct 1150 TAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTG 1091 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| |||||||| || || ||||| ||||| | ||||| Sbjct 1090 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTT 1031 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || ||||| | ||||| Sbjct 1030 GCCTGTCAGGGTCTTCACGAAGATCTGCAT 1001 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||||||||| || || ||||| || | || || | |||||||| Sbjct 753 ACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 694 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 693 AGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 634 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| |||||||| || || || |||||||| | ||||| Sbjct 633 ATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTG 574 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 573 CCAGTCAGGGTCTTCACAAAGATCTGCAT 545 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || |||||||| || || ||||| |||| || || | |||||||| Sbjct 981 ACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 922 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 921 AACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 862 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || || ||||| ||||| | ||||| Sbjct 861 ATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTG 802 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 801 CCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || || || ||||| |||| || || | |||||||| ||||| Sbjct 1432 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTG 1373 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || ||||||||||| || ||||| || |||||||| || || Sbjct 1372 CTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTT 1313 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| |||||||| || || ||||| ||||| | ||||| ||||| Sbjct 1312 GGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTGCCTGT 1253 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 1252 GAGGGTCTTCACGAAGATCTGCAT 1229 >seq1001 Length=3733086 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || || || ||||| |||| || || | |||||||| ||||| Sbjct 1254384 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 1254325 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || || |||||||| || ||||| || |||||||| || || Sbjct 1254324 CTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 1254265 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| |||||||| || || || |||||||| | ||||| || || Sbjct 1254264 GGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 1254205 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 1254204 CAGGGTCTTCACGAAGATCTGCAT 1254181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109448791242236