Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1001 131 1e-25 seq317 123 2e-23 seq1456 118 7e-22 >seq1001 Length=3733086 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1254389 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 1254330 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||||||| | || | ||||||||||| Sbjct 1254329 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1254270 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | |||||| || | ||| ||||| || Sbjct 1254269 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTTG 1254210 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || |||||||| |||||||||||||| Sbjct 1254209 CCAGTCAGGGTCTTCACGAAGATCTGCATATT 1254178 >seq317 Length=4125 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||| ||| || || ||||| Sbjct 963 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAG 904 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| ||||| |||||| | Sbjct 903 ATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTT 844 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | ||| ||||| || || ||||| |||||||| Sbjct 843 TCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACG 784 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 783 AAGATCTGCAT 773 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 1437 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 1378 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || || |||||| |||| | ||||||||||| Sbjct 1377 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 1318 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| ||||| || Sbjct 1317 ATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTG 1258 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||| Sbjct 1257 CCTGTGAGGGTCTTCACGAAGATCTGCAT 1229 Score = 118 bits (130), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 735 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAG 676 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| ||||| ||||| || Sbjct 675 ATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 618 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | ||| || || | ||| ||||| || || || || ||||||| Sbjct 617 TCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 558 Query 34969 CAAAGATCTGCATATT 34984 |||||||||||||||| Sbjct 557 CAAAGATCTGCATATT 542 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 1210 AACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 1151 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || || || || |||||| | || | ||||||||||| Sbjct 1150 TAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTG 1091 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | ||| | |||||| || | ||| ||||| || Sbjct 1090 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTT 1031 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 1030 GCCTGTCAGGGTCTTCACGAAGATCTGCAT 1001 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||| ||| || |||||||| Sbjct 1647 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAG 1588 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || |||||| | || | ||||||||||| ||||| |||||| Sbjct 1587 ATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 1528 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| ||||| || || || || || || || Sbjct 1527 TCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACG 1468 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1467 AAGATCTGCAT 1457 >seq1456 Length=293654 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 119629 AACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 119570 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || || ||||||||| | || | ||||||||||| Sbjct 119569 CAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTG 119510 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || || | | || | || | ||| || || | ||| ||||| || Sbjct 119509 GATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTT 119450 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||||||||| |||||||| Sbjct 119449 GCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 120294 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 120235 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| |||||| Sbjct 120234 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 120175 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || || ||||||||| Sbjct 120174 TCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACA 120115 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 120114 AAGATCTGCAT 120104 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||| || | || | || |||||||| | ||||| || ||||| ||||| ||||| Sbjct 120561 TTTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 120502 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||| |||||| ||||| || || || || || |||||| | Sbjct 120501 GACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGT 120442 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| ||||| |||||| | || | || | |||| Sbjct 120441 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCA 120382 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||| ||||| || || || || || || || ||||||||||| Sbjct 120381 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 120332 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34775 CAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAG 34834 |||||| | ||||| || ||||| ||||| ||||| || | | | || |||| ||||| Sbjct 119399 CAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAG 119340 Query 34835 CTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 ||| || |||||||| || || || ||||||||| | || | ||||||||||| || Sbjct 119339 CTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 119280 Query 34895 CTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||| |||||| | || | || | ||| || || | ||| ||||| || || Sbjct 119279 CTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCC 119220 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || || ||||||||||| Sbjct 119219 TGTGAGGGTTTTGACGAAGATCTGCAT 119193 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 119838 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 119779 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 119778 ATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 119721 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | ||| || || | ||| ||||| || || ||||| ||||||| Sbjct 119720 TCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 119661 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 119660 CAAAGATCTGCAT 119648 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 119155 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 119096 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 119095 ATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 119038 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | ||| || || | ||| ||||| || || || || || |||| Sbjct 119037 TCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 118978 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 118977 CAAAGATCTGCATGATTC 118960 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 120066 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 120007 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 120006 ATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTC 119947 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | || ||||| || || ||||| || || || Sbjct 119946 TCGATGGTGTCTGACGGCTCAACTTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACG 119887 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 119886 AAAATCTGCAT 119876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624468462624