Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1531 302 5e-77 seq1787 98.7 1e-15 >seq1531 Length=8964412 Score = 302 bits (334), Expect = 5e-77 Identities = 612/898 (68%), Gaps = 8/898 (1%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || ||||| || || || || | || | || |||||||| || | || ||||| Sbjct 403545 CATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCCTC 403486 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | || || ||||| || ||||| || |||| || || || || || | Sbjct 403485 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCACAT 403426 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 || ||| | | |||||| |||||||| | |||||| ||| ||||||| || || Sbjct 403425 CAAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGT-TTCATCAGGTCTTGAT 403367 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || || | || || || || || ||||| | ||| ||||| || || || || | Sbjct 403366 TCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACGG 403307 Query 18896 CCTCTGA-TATAATA-GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAA 18953 | ||| |||||| | | | ||| || || | | || | || || |||| Sbjct 403306 CA-CTGTCTATAATCTGGTGAATATCTGCCTCGCTTGGCCTGTTA-ACCAGGTGGCTAAA 403249 Query 18954 CATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAA 19013 ||||| ||| ||||| ||| || | ||||| ||||| || |||| || || || || Sbjct 403248 CATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAA 403189 Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGA 19073 || | || ||||||| |||||| || || ||||||||||||| ||||| || ||||| Sbjct 403188 AGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGA 403129 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT 19133 || || || ||||| || ||||| |||||||| | | ||| ||| || | || || Sbjct 403128 GAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGC-TCGCA 403070 Query 19134 ATTATG-AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | |||||| | || ||||| ||||||||||| |||||||| || | ||||| | Sbjct 403069 GGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGA 403010 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | |||||| |||| | | ||||| | ||| | || || | || ||||| | || Sbjct 403009 TTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGAC 402950 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||||||||| ||||| || || || || || ||||| || || || || || || || | Sbjct 402949 TGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCT 402890 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 | || | || || || | | ||||| || |||| ||| ||| | || || ||||||| Sbjct 402889 CGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCAC 402830 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTAT 19432 |||||||||| ||||| || | | || || || |||||||| | || | | Sbjct 402829 TAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCC 402770 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||||| | | || ||| || |||||||| || |||||| || || ||| | | Sbjct 402769 TCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGG 402710 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATT 19550 | || || |||||| ||| || || | | ||||||||||| || || || | ||| Sbjct 402709 CCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1787 Length=2284422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||||||| || ||||| ||||| || || ||||||||||| || |||| || || || Sbjct 1959411 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAG 1959470 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || | ||||||||||| ||||| || || | |||||| |||| |||||| || || Sbjct 1959471 AACGTCAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCT 1959530 Query 19072 GAAAAGA 19078 |||| || Sbjct 1959531 GAAATGA 1959537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562092583161120