Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1531 336 2e-87 seq1224 147 2e-30 >seq1531 Length=8964412 Score = 336 bits (372), Expect = 2e-87 Identities = 532/760 (70%), Gaps = 2/760 (0%) Strand=Plus/Minus Query 29709 GAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29768 ||||||||| | | ||||| || | ||| ||||| | | || || | || |||| Sbjct 377562 GAAATCCTCGAACCTGAAGTCATCAATGTTTTCCACTTTGCGTTTGATGTTGAGGATGGG 377503 Query 29769 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 29828 ||| |||| || | |||| | ||| || || | || | |||| || || || Sbjct 377502 AAAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATACAC 377443 Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 || ||||||||||||||||| ||||| || || || | ||| || |||| ||| || || Sbjct 377442 ATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTAT 377383 Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948 ||| || || |||||| ||||||||||||||| || || || ||||| || ||||| || Sbjct 377382 CATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCTCC 377323 Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG-ACACATGG 30007 || | |||||| ||||||||||||||||| ||||| | ||||||||||| ||| | || Sbjct 377322 GGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACA-AAGG 377264 Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| ||||| || ||||| | || |||| |||||||| ||| | | ||| | Sbjct 377263 TGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATTA 377204 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | | |||||| | |||| ||| ||||| || | | | | ||||| ||||| | Sbjct 377203 TCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTCCACAC 377144 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 | |||| |||||| | | | ||| | || || ||||| || |||||||| |||| Sbjct 377143 CTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATTGGA 377084 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | || || | || |||||||||||||| || || | | || | | ||||||| | Sbjct 377083 AGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCAAGA 377024 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307 | |||| |||||||| || ||||| || | ||| || || || || || |||| || Sbjct 377023 ATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTCCTTGGCGT 376964 Query 30308 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30367 | || || || | |||||||| || ||||| || || || | |||| || || | || Sbjct 376963 TCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACACGCT 376904 Query 30368 TGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGG 30427 | || ||||| | ||||||||| || |||| | || ||| | |||||| || | Sbjct 376903 TTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACCAAAAACAG 376844 Query 30428 ACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACC 30467 ||||| || || || || | ||||| | | | ||| || Sbjct 376843 ACAAGGTCCCTGTTCCTGTACGGTCTCTCTTTCTTTTTCC 376804 >seq1224 Length=3633418 Score = 147 bits (162), Expect = 2e-30 Identities = 178/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 30154 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30213 ||| |||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 3004530 TCCTTGTATTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCC 3004471 Query 30214 TCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30272 || || ||| ||| | || | |||||||| ||||| | || || ||||||||||| Sbjct 3004470 TCCTCATAGTGGCTC-AGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCA 3004412 Query 30273 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30332 ||| | || || || || || ||| || ||||| || || ||||| ||||||| Sbjct 3004411 GATGTGCACGTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAA 3004352 Query 30333 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30392 |||||||| | || || ||||||| || | ||| || || || | ||||||||| || Sbjct 3004351 GAGCTCCTCAGCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTGCCC 3004292 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| | |||||||| |||||||||||||||||||||||||| |||||| Sbjct 3005369 AGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGT 3005310 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| ||| |||| ||||| | |||||| ||||||||||| || ||||||| | Sbjct 3005309 ACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACAT 3005250 Query 29989 ACGTAAAACT-GACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || |||| |||| | || |||||| || || | ||||| Sbjct 3005249 ACATAGAACTGGACA-AAGGCGTGGCAGGGTGGCAACGCCAT 3005209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408606106097684