Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1531 260 3e-64 seq1648 187 5e-42 seq2197 122 2e-22 seq1787 100 5e-16 >seq1531 Length=8964412 Score = 260 bits (288), Expect = 3e-64 Identities = 577/857 (67%), Gaps = 19/857 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| |||| ||||||| ||||||||||| Sbjct 403530 CTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCCTCCAGGGAGATGTTCTC 403471 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATC---TGTTCCAG 47955 ||||||| |||||||| ||||| || | | | || |||| | | ||| Sbjct 403470 CATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCT---GCACATCAAGTCTCCCAA 403414 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATG-TTCATGCCTATGA 48014 || ||| || || |||| || || | | ||| ||| | || ||||| || || | Sbjct 403413 CAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGG-TCTTGATTCATCCCAATCA 403355 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | |||||| | || | ||| | |||||| | ||| |||| ||||| | | || Sbjct 403354 GCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACGGCACTGTCTATAA 403295 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 |||| | || | ||| || |||| |||||| | | | | || |||| Sbjct 403294 TCTGGTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCT---AAACATCAGACAGG 403238 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 |||| || |||||| || || || | |||||| ||| |||||||||| || || | Sbjct 403237 CAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCTG 403178 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || |||| || | |||||| || || || || || |||||||| ||||| | Sbjct 403177 GCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATCC 403118 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | ||||| || ||||| || | | || || |||| || | |||| |||| Sbjct 403117 CTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAGGTCTCCAATCC 403058 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| || ||||||||||| | || || | ||||| || || || | Sbjct 403057 ACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAAACA 402998 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| |||| |||| ||| ||| ||||| || || |||||| || Sbjct 402997 GATGCTTTTTCTCA--TGCGGATCCTCAATGTAGGTGTCGATCAAGAGACTGTACATTTC 402940 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||| || | ||||| || || |||||||| || |||||| ||||||||| || || Sbjct 402939 AGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTG 402880 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| ||| || |||||||||| | |||||||||| |||| || ||||| ||| ||||| Sbjct 402879 CACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCACTAGCTGCAAA 402820 Query 48553 GAAGGCAAGGACATGT--TTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 ||| || | | |||| || | ||| || ||||||| |||||| |||| Sbjct 402819 GAATGCCA--AAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCCTCCAATGG 402762 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | | ||| || || | ||| ||||| ||| |||||||| ||||| | || || ||| Sbjct 402761 TCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGGCCTTCTTG 402702 Query 48671 TACATGCCCCATATGTC 48687 |||||| ||| ||||| Sbjct 402701 TACATGAACCAGATGTC 402685 >seq1648 Length=77580 Score = 187 bits (206), Expect = 5e-42 Identities = 434/641 (68%), Gaps = 19/641 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || |||| || |||||||| ||||||| |||||||| | ||||| || || Sbjct 8021 CTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATTTTC 8080 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| ||| || ||||| | ||| ||| || | ||| | | || | ||||| Sbjct 8081 CATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCG-GACAG-CTGAGCTCTGCCAGC 8138 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGG-GTGATGTTCATGCCTATGAG 48015 || | || || || |||| ||||| || ||| || |||| |||||| || || | Sbjct 8139 AGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGA-GTTCATCCCGATCAT 8197 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAA 48074 | ||| | || |||| || || ||||||| ||| || ||| ||||| | || | Sbjct 8198 GTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTG-ACGGCCTGGGTGACGA 8256 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 |||| | || | | | ||| || | || ||| || | | | || ||||| Sbjct 8257 TCTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTT---AAACAACAGGCAGG 8313 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | || || | ||||||||| ||||| || || || || | || |||||| || || | Sbjct 8314 CGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTG 8373 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | ||| | | || ||||||||||| || || || || || |||||||||| | Sbjct 8374 GCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTC 8433 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT-GAGATC 48313 ||||||| || ||||| ||| |||| ||| ||| ||| | |||| || | |||| Sbjct 8434 CCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCG-AAGCTGGTGTCTTTACTGGCGATC 8492 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || ||||||||||| |||||| | | || || | ||||| | |||||||| Sbjct 8493 CACTGCAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCTCCACTGCCCGGAAC 8552 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 ||| || | ||| || | |||| | || || | | ||||| | ||||||| Sbjct 8553 AGCCGCTGTCTCTCCCCCGGGTCCCGGATGTACGTGTCAATCAGCAGGCT---GTACATC 8609 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAA 48471 || ||||| || ||||| || |||||||||||||| ||||| Sbjct 8610 TCCGAGTGGACGTTCTCCATGGCGATCTGGAACCCATAGAA 8650 >seq2197 Length=5472366 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || || ||||||||||| ||| | ||| ||||| | ||||||| Sbjct 5042653 CTGGAATTCTCCAGACAGCACCCTCCTGGTGTAGATGTTGCTGGTGTAAGCCTCGATGGA 5042594 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||||||||| || ||||||||| ||||||||||||||| |||| || || || Sbjct 5042593 CTCGTTGTTCCCCAGGATTTGTGCAGTGGAGGCTGTGGGCATGGGGGCCAACAACAGGCT 5042534 Query 213038 GTTCCTCACTCCGTGCT 213054 ||||||||| || |||| Sbjct 5042533 GTTCCTCACACCATGCT 5042517 Score = 113 bits (124), Expect = 8e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||||| |||||||||||| |||||||| || ||||||||| |||||||| || Sbjct 5039029 TGTGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCCGAGGTTCTGCTG 5038970 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 ||| ||||| ||||| | |||||||| |||||||||||| || |||||| Sbjct 5038969 GTTAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTTCCTGTCTCT 5038915 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 ||||||||||| ||||||| || | ||| || | || ||||||||||||||||| | Sbjct 5038339 GGACACATGAGCGTCCAGTCACCATTCTCTTCCACACGCTTCATGAACAGGTCCGGGATC 5038280 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 |||| ||| ||||||||| | | | | ||| ||| || | ||| || || Sbjct 5038279 CACATGGCGTAGAACAGGTCTCGTGCGCGCTGCTCCTCCTTCCCCGTGTTCTTTCGAGCG 5038220 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || || || || |||||||| |||||||| ||||||| ||| || || ||||| || || Sbjct 5038219 TCCAGGAACTCGAAGATGTCTGCGTGCCAAGGCTCCAGGTACATAGCGAAGGCACCAGG 5038161 >seq1787 Length=2284422 Score = 100 bits (110), Expect = 5e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || |||||| | |||||||||||||| ||||||||||||| ||||||||||| Sbjct 1958821 CTGGTATTCTCCCACTTTCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGTGAGATGTTCTC 1958880 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| ||||||||| Sbjct 1958881 CATGAAGTCGAAGGGGTT 1958898 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || |||||||||||| | ||||| || ||||| | |||||| ||| |||||||||| Sbjct 1959416 CAGGCAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAGAACGT 1959475 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGA 48243 || |||||||| | || |||| || ||||||||||| || || || || || || Sbjct 1959476 CAGCCCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCTGA 1959532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 48239 CCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG 48298 || ||||||||||| ||||| || || ||||| || | | ||| ||||||| || Sbjct 1959821 CCTGAGAAGAAGATTCCCTCTACAGCAGCGAAGGCAACCACACGCTCCCCGAAAGTGGCT 1959880 Query 48299 TTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 | |||||| |||||| || |||||||| ||||||||||| | || |||| ||| Sbjct 1959881 TCCTTGTCCCCGATCCACCTGAGTGCCCAGTCAGCCTTCTTCTTCACACAGGGCAGGGTC 1959940 Query 48359 TCTATGGCCCGGAAGAG 48375 |||||||| |||||| Sbjct 1959941 TCTATGGCATTGAAGAG 1959957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931505925278720