Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1531 210 4e-49 seq1648 147 4e-30 seq1787 118 2e-21 seq2197 96.9 6e-15 >seq1531 Length=8964412 Score = 210 bits (232), Expect = 4e-49 Identities = 321/451 (71%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 |||||||| | ||||||||||||||||| ||||||||| || | ||||||||| | Sbjct 402800 TCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAGTGAGAATCTGGTAG 402859 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 |||||||| || || ||||| | ||||||| ||| ||||| || |||||||| | Sbjct 402860 AGAGATTCTACAAAGAGGTGCAATTGACCGAGGCCAGGTGCTTCTATGGCTTCCAGATTG 402919 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAG 25765 |||| || || | || ||||| |||| || || |||| || |||||| | Sbjct 402920 CCATTGAGAACATCCATTCTGAAATGTA---CAGTCTCTTGATCGACACCTACATTGAGG 402976 Query 25766 ACGTCGCC-GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 | ||| |||| | | | |||||| ||| |||||| || ||| | | |||| | Sbjct 402977 ATC-CGCATGAGAAAAAGCATCTGTTTAATGCAATCGAGACCACACCTTGTGTAAAGAAG 403035 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 ||||| ||||||| | | |||||| || | | || || ||||| || || || Sbjct 403036 AAGGCTGAGTGGGCCCTCAGGTGGATTGGAGACCTGCGAGCCACTTTTGGGGAACGTGTG 403095 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || || || |||||||| || ||||||||| || || ||||| || || |||||| Sbjct 403096 GTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTTTGCAGCTATATTCTGG 403155 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 | ||| ||| || ||||| |||||| ||||| ||||||||||| |||||||| || Sbjct 403156 TTGAAGAAGAGAGGATTGATGCCAGGGCTG-ACTTTCTCCAACGAGCTGATCAGCAGAGA 403214 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||||| | |||| || |||||||| ||| Sbjct 403215 TGAGGGGATGCACACTGAGTTTGCCTGTCTG 403245 >seq1648 Length=77580 Score = 147 bits (162), Expect = 4e-30 Identities = 250/361 (69%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 25677 GGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 |||||| ||||||||| || |||||||| ||||| || || || ||||| ||| |||| Sbjct 8663 GGAGGCTCGGTGTTTCTATGGGTTCCAGATCGCCATGGAGAACGTCCACTCGGAGATGTA 8604 Query 25737 TGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGG 25793 || || ||||| |||||||| ||| | |||||| | |||||||| | Sbjct 8603 ---CAGCCTGCTGATTGACACGTACATCCGGGACCCGGGGGAGAGACAGCGGCTGTTCCG 8547 Query 25794 TGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 || | ||| | | ||| | | ||||||||| ||||| || |||||||| Sbjct 8546 GGCAGTGGAGACCCTCCCCTGTGTGCGCAGGAAGGCGGACTGGGCGCTGCAGTGGATCGC 8487 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 ||| | | | | || || ||||||||||| ||||| ||||| |||||||| |||| Sbjct 8486 CAGTAAAGACACCAGCTTCGGGGAGCGGCTGGTCGCCTTCGCTGCCGTGGAGGGAGTCTT 8427 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 ||| || || ||||| ||||| |||||||| ||| | ||| ||||| || || Sbjct 8426 CTTCTCAGGGTCATTTGCTGCCATTTTCTGGCTAAAGAAACGCGGGCTGATGCCAGGCCT 8367 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | ||| || || || || || || | |||||||| | ||| | || || |||||||| Sbjct 8366 GACCTTCTCAAATGAACTAATTAGTCGTGACGAGGGCTTGCACTGTGAGTTCGCCTGCCT 8307 Query 26034 G 26034 | Sbjct 8306 G 8306 >seq1787 Length=2284422 Score = 118 bits (130), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 |||||| |||| ||||| || || |||||||| ||| ||| || ||||| ||||| Sbjct 1959534 TTTCAG--GTTCCTTTGCTGCTATTTTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGGCT 1959477 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | || ||||||||||| |||||||| ||||||||||| ||| | || ||||||||||| Sbjct 1959476 GACGTTCTCCAACGAGCTGATCAGCAGAGACGAGGGTCTGCACTGTGACTTTGCCTGCCT 1959417 Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAA 26093 | | | || |||||||| | |||| || | ||| || || || ||||||| Sbjct 1959416 GATGTTCA---GCCACTTGGTGAACAAGCCCAGCGAGGAGGCCATCCACTCCATCATCAG 1959360 Query 26094 AGAGGCTGTGGAGATCGA 26111 || ||||| ||||||| Sbjct 1959359 GGACGCTGTCAAGATCGA 1959342 >seq2197 Length=5472366 Score = 96.9 bits (106), Expect = 6e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 221975 TCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACC 222034 || || ||||| |||||| | |||||||| || |||||| || |||| || Sbjct 5038363 TCCTCGAGGCCGGGACACTCGTGCGGACACATGAGCGTCCAGTCACCATTCTCTTCCACA 5038304 Query 222035 CTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCC 222094 | || |||||| |||||||||||||||| || | || || |||| | ||||||||| Sbjct 5038303 CGCTTCATGAACAGGTCCGGGATCCACATGGCGTAGAACAGGTCTCGTGCGCGCTGCTCC 5038244 Query 222095 TCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCC 222154 ||| || |||| || | |||| ||||| || ||||| |||||||| |||||| Sbjct 5038243 TCCTTCCCCGTGTTCTTTCGAGCGTCCAGGAACTCGAAGATGTCTGCGTGCCAAGGCTCC 5038184 Query 222155 AGATAGACGGCCAGAGCGCCGGGTCGCT 222182 || || | || | || || || |||| Sbjct 5038183 AGGTACATAGCGAAGGCACCAGGGCGCT 5038156 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| || ||||||||||| ||| | ||| ||| | | |||||| Sbjct 5042655 ACCTGGAATTCTCCAGACAGCACCCTCCTGGTGTAGATGTTGCTGGTGTAAGCCTCGATG 5042596 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||| |||||||| || || ||| ||| ||||||||||| |||| || ||| Sbjct 5042595 GACTCGTTGTTCCCCAGGATTTGTGCAGTGGAGGCTGTGGGCATGGGGGCCAACAACAGG 5042536 Query 221243 CTGTT 221247 ||||| Sbjct 5042535 CTGTT 5042531 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 || |||| | |||||| || ||||||||||| ||||||||||| || |||| | || Sbjct 5039028 GTGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCCGAGGTTCTGCTGG 5038969 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGG 221847 |||||||||| ||| ||||||||||| ||||| |||| Sbjct 5038968 TTAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGG 5038928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928818002827520