Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1531 192 9e-44 >seq1531 Length=8964412 Score = 192 bits (212), Expect = 9e-44 Identities = 571/871 (66%), Gaps = 17/871 (2%) Strand=Plus/Minus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||| ||||| || || ||||| ||||| || |||| || |||| || || | ||| Sbjct 403527 GTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCCTCCAGGGAGATGTTCTCCAT 403468 Query 17929 AAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGT-ATTAATTCGTATAATAATC 17987 || ||||| || || || || ||| || || || || || || || |||| Sbjct 403467 GAAGTCAAAGGGGTTTTCAGTGTTGTAA-ATCTTGCTGCACATCAAGTCTCCCAACAATC 403409 Query 17988 TATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGA 18047 ||||||||||||| || | ||| ||| ||||| || |||||| || | || | | Sbjct 403408 TATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCA 403349 Query 18048 AAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAG-ACTCTTT-TATTATGTT 18105 || || || || | | ||| |||| ||| |||| || | ||| | | || | || | Sbjct 403348 CGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGACGGCACTGTCTATAATCTGGT 403289 Query 18106 TATTACC---CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | || | || | || ||| | |||| | ||| || || || | | || || Sbjct 403288 GAATATCTGCCTCGCTT--GGCC---TGTTAACCAGGTGGCTA-AACATCAGA--CAGGC 403237 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||| |||||||| | || ||||||||| || | ||||| || || | ||| || Sbjct 403236 AAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCTGG 403177 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||| | ||||| || || | ||| ||||| | ||| || | ||| || || || || Sbjct 403176 CATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATCCC 403117 Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG-CTCAGTATCC 18341 || || ||||| || | | | ||| ||||| || | | ||| |||| Sbjct 403116 TTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAGGTCTCCA-ATCC 403058 Query 18342 ATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 | | | ||||| || | | | ||| ||| | |||| || |||||||||| Sbjct 403057 ACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAAACA 402998 Query 18402 AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAG 18461 || | ||| || | | ||| | || || |||||||| || | | |||||||||| Sbjct 402997 GATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGACTGTACATTTCAG 402938 Query 18462 AATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA 18521 |||| ||| | || || || ||||| || | ||| || | || ||||||| |||| | Sbjct 402937 AATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTGCA 402878 Query 18522 TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAA 18581 ||| | || ||||| ||||||| ||||||| | || ||||| ||| || ||| || | Sbjct 402877 CCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCACTAGCTGCAAAGA 402818 Query 18582 ATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTA 18641 ||||||||| || || ||||| |||||||| || || ||||| | |||| | || | Sbjct 402817 ATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTCCTCCAATGGTCCA 402758 Query 18642 TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACA 18701 || || || || ||||| |||| |||||| || || | |||||| ||||||| Sbjct 402757 AGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACGGCCTTCTTGTACA 402698 Query 18702 TTTTATAAATATCTTCATGTTGTATAGGAAA 18732 | | || || | | ||||||||||| Sbjct 402697 TGAACCAGATGTCGTGGTTCTGTATAGGAAA 402667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731850885492800