Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq335 107 6e-18 seq2197 98.7 3e-15 >seq335 Length=4786045 Score = 107 bits (118), Expect = 6e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 302617 GATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGC 302676 ||||| || |||||||| ||||| || || ||||||| ||||| || |||||||| | | Sbjct 2679640 GATGTCTTCACAGCTGTGTCAATCAGTCCCTCACGACCGCCCATGGCGTGGAAGAAAAAC 2679581 Query 302677 TCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGA 302735 || ||| ||| || || | | | ||| |||| ||||| ||||| | |||||| Sbjct 2679580 TCCGACGG-CGTCAGGCCGGCCAGGTACGAGTTCTCCACGAACCCACGAGACTCGGGACC 2679522 Query 302736 ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTT 302795 | |||| |||| | ||||| ||||| || | | ||||| | || |||||||| Sbjct 2679521 GTAGTCGTCCTTGATGAAGTGCGGCAGCGTGCGATGGCGGAAGCCGAAGGGAATACGCTT 2679462 Query 302796 TCCATCAACGTTCTGCTGTCCCA 302818 ||| || |||||||| ||||||| Sbjct 2679461 TCCCTCTACGTTCTGTTGTCCCA 2679439 >seq2197 Length=5472366 Score = 98.7 bits (108), Expect = 3e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || || ||||| ||| ||||| || |||||||||||| | |||| ||||| Sbjct 5039027 TGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCCGAGGTTCTGCTGGT 5038968 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 |||| || | ||| || || |||||||| || ||||| ||| |||||||||| |||||| Sbjct 5038967 TAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTTCCTGTCTCTGTCTGTG 5038908 Query 155749 CGTC 155752 | || Sbjct 5038907 CCTC 5038904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471774076513796