Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq317 120 3e-22 seq1456 116 3e-21 seq1001 111 1e-19 seq1446 86.0 6e-12 >seq317 Length=4125 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| ||||||| || || || || || || || || ||||| | ||||| | Sbjct 1457 ATGCAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGT-GGAGCCATC 1515 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1516 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 1575 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||||||||| || ||| |||| ||| | | | |||| || || || Sbjct 1576 ACAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 1635 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || || ||||| |||| |||| || || Sbjct 1636 CATCCAGAAGGAGTCAACCCTTCATCTGGTGCTGCGTCTGCGTGGTGG 1683 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || || || || || || || || ||||| | ||||| | Sbjct 1001 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTG-AGCCATC 1059 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1060 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1119 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||||||||| || ||||| || ||| | | | |||| || || || Sbjct 1120 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAA 1179 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || ||||| |||||||| | || |||| || ||| Sbjct 1180 CATCCAGAAGGAGTCAACACTCCACTTGGTTCTCCGTCTGCGTGGTGGC 1228 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || || || || || || || || ||||| | ||||| | Sbjct 1229 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTCG-AGCCATC 1287 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1288 AGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 1347 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||||||||| || ||||| || ||| | | | |||| || || || Sbjct 1348 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 1407 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || |||||||| |||| |||| || ||| Sbjct 1408 CATCCAGAAGGAGAGCACCCTCCACTTGGTCCTGCGTCTGCGTGGTGGC 1456 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || || || || || || || || || || || || | ||||| | Sbjct 545 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCG-AGCCATC 603 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 604 CGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 663 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| ||||| |||||||| ||| | | | |||| || || || Sbjct 664 GCAGCGTCTCATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 723 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || || || || || || || | || |||| |||| || ||| Sbjct 724 CATCCAGAAAGAGTCCACCCTTCATCTTGTCCTGCGTCTGCGTGGTGGC 772 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || || || || || || || || ||||| | ||||| | Sbjct 773 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTTG-AGCCATC 831 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||||||||| || || || || || || || Sbjct 832 TGACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 891 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || || ||| |||| ||| | | | |||| || || || Sbjct 892 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 951 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || || || || || || || ||||| |||| |||| || ||| Sbjct 952 CATCCAGAAAGAGTCAACCCTTCATCTGGTGCTGCGTCTGCGTGGTGGC 1000 >seq1456 Length=293654 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | ||||| || || || || || || || ||||| || | ||||| | Sbjct 120332 ATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTG-AGCCATC 120390 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 120391 AGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 120450 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||| ||||| |||||| |||| ||| | | | |||| || || || Sbjct 120451 ACAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 120510 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || ||||||||| |||| |||| || || Sbjct 120511 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 120558 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | ||||| || || || || || || || || ||||| | ||||| | Sbjct 119193 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCG-AGCCATC 119251 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 119252 CGACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119311 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 119312 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCCGACTACAA 119371 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || ||||| ||| | || |||| |||||| Sbjct 119372 CATCCAGAAGGAGAGCACTCTCCACTT-GTGCTCCGTCTGCGTGGAGGC 119419 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | ||||| || || || || || || || || || || | ||||| | Sbjct 118965 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCG-AGCCATC 119023 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 119024 CGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119083 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || |||||||| ||| | | | |||| || || || Sbjct 119084 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 119143 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| | ||| |||| |||| || ||| Sbjct 119144 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGTGGC 119192 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || || || || || || || || || || ||||| | ||||| | Sbjct 119648 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAAGTCG-AGCCATC 119706 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 119707 CGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119766 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || |||||||| ||| | | | |||| || || || Sbjct 119767 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 119826 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| | ||| |||| |||| || ||| Sbjct 119827 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGTGGC 119875 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || || ||||| || | | Sbjct 119420 ATGCAGATATTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCGTCA 119479 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||| || || || || || || || Sbjct 119480 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 119539 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 119540 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 119599 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || |||||||| | || |||| |||||| Sbjct 119600 ATCCAGAAGGAGAGCACTCTCCACTTGGTTCTCCGTCTGCGTGGAGGC 119647 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || || ||||| || | | Sbjct 119876 ATGCAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTCA 119935 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 119936 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119995 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 119996 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 120055 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||| | ||| |||| |||| |||||| Sbjct 120056 ATCCAGAAAGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGAGGC 120103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 120104 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTCGAGGTGGAGCCGTCA 120163 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 120164 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 120223 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 120224 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 120283 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || | || |||| |||| || ||| Sbjct 120284 ATCCAGAAAGAGTCCACCCTTCATCTTGTCCTGCGTCTGCGTGGTGGC 120331 >seq1001 Length=3733086 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || || || || || || || || || || | ||||| | Sbjct 1254181 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTG-AGCCATC 1254239 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1254240 CGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1254299 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 1254300 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1254359 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || ||||||||| |||| |||| || || Sbjct 1254360 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 1254407 >seq1446 Length=3482675 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 1542123 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCTTCA 1542182 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1542183 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 1542242 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 1542243 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1542302 Query 24884 ATTCAAAAGG 24893 || || |||| Sbjct 1542303 ATCCAGAAGG 1542312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449884620454240