Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq317 152 3e-32 seq1456 150 1e-31 seq1001 145 5e-30 seq1446 125 5e-24 >seq317 Length=4125 Score = 152 bits (168), Expect = 3e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||| | ||||||||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1441 CAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1382 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| ||||| || || || |||||| |||| | ||||||||||| Sbjct 1381 TTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTC 1322 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | |||||| || | ||| ||||| Sbjct 1321 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGT 1262 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||||||||| || |||||||||||| Sbjct 1261 CTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 757 CAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 698 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || ||||||||| |||| | ||||||||||| Sbjct 697 TTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 638 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || | |||||| |||| ||| ||| Sbjct 637 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATG 580 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| |||||||||||||| Sbjct 579 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 Score = 138 bits (152), Expect = 7e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 985 CAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 926 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||| || || ||||||||| |||| | ||||||||||| Sbjct 925 TTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 866 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | ||| | ||| || || | ||| ||||| Sbjct 865 TTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGT 806 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||||||||| || |||||||||||| Sbjct 805 CTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1669 CAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1610 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| ||||| ||||| || || || |||||| | || | ||||||||||| Sbjct 1609 TTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTC 1550 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | ||| | ||| || || | ||| ||||| Sbjct 1549 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGT 1490 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || ||||| || || |||||||||||| Sbjct 1489 CTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| ||||| || Sbjct 1192 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAA 1133 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || || |||||| | || | ||||||||||| | || || |||||| Sbjct 1132 GATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 1073 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | ||| || || | ||| |||||||| || || |||||||| || Sbjct 1072 CTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 1013 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 1012 GAAGATCTGCATG 1000 >seq1456 Length=293654 Score = 150 bits (166), Expect = 1e-31 Identities = 164/216 (76%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 119860 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 119801 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||| || || ||||||||| | || | ||||||||||| Sbjct 119800 TTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 119741 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || | |||||| |||| ||| ||| Sbjct 119740 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATG 119683 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||| ||||||||||||||| Sbjct 119682 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 119647 Score = 145 bits (160), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 119177 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 119118 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||| || || ||||||||| | || | ||||||||||| Sbjct 119117 TTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 119058 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | || | |||||| |||| ||| ||| Sbjct 119057 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATG 119000 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| || || ||||| || ||||||||||||||||| Sbjct 118999 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGAT 118962 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 |||||||||||||| ||||| ||||| || | | |||| |||| ||||| ||||| ||| Sbjct 119389 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCG 119330 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || ||||| || || ||||||||| | || | ||||||||||| | || || ||| Sbjct 119329 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 119270 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 ||| | || | || | |||||| |||| ||| |||||||| || |||||||| Sbjct 119269 ACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTT 119210 Query 34961 TTTACAAAGATCTGCATG 34978 || || |||||||||||| Sbjct 119209 TTGACGAAGATCTGCATG 119192 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 120316 CAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 120257 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || ||||||||| | || | ||||||||||| Sbjct 120256 TTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 120197 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || || | ||| ||||| Sbjct 120196 TTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGT 120137 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||||||||||||| Sbjct 120136 CTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 120103 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||||||||||| ||||| ||||| || ||| |||| |||| Sbjct 119631 AGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 119572 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| || || ||||||||| | || | ||||||||||| Sbjct 119571 TCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 119512 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | || | ||| || || | ||| |||||| Sbjct 119511 TGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTC 119452 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||| ||||||||| Sbjct 119451 TTGCCTGTGAGGGTCTTCACAAATATCTGCATG 119419 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | ||| |||| ||| | ||||||||||||||| ||||| ||||| Sbjct 120561 TTTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 120502 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| |||| || || ||||||||||| || || || |||||| | Sbjct 120501 GACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGT 120442 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | || || |||||| | || | || | ||| Sbjct 120441 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCA 120382 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || ||||| || || |||||||||||| Sbjct 120381 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| || ||||| | |||| ||| ||||| ||||| ||||| || Sbjct 120102 CCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120043 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || |||||||| || || ||||||||| | || Sbjct 120042 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGG 119983 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | || | ||| || Sbjct 119982 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACT 119923 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || |||||||| || |||||||| || || || ||||||||| Sbjct 119922 TCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 >seq1001 Length=3733086 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1254393 CAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1254334 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||| || || ||||||||| | || | ||||||||||| Sbjct 1254333 TTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1254274 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| ||||| Sbjct 1254273 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGT 1254214 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || |||||||| || ||||||||||| Sbjct 1254213 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1254181 >seq1446 Length=3482675 Score = 125 bits (138), Expect = 5e-24 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| ||||| ||||| |||||||||| Sbjct 1542312 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGA 1542253 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||||||| | || | ||||||||||| | || || || || || Sbjct 1542252 TCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCAC--ATT 1542195 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | || | ||| || || | ||| |||||||| ||||| |||||||| || Sbjct 1542194 CTCGATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1542135 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 1542134 GAAGATCTGCAT 1542123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683638668652