Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq317 122 7e-23 seq1456 113 3e-20 seq1001 102 6e-17 >seq317 Length=4125 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| |||||| || || ||||| || ||||| || || | Sbjct 999 CCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAC 940 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || ||||||||| | || | | ||||| || ||||| Sbjct 939 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGG 880 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || ||||| |||| | |||||||| | || ||| Sbjct 879 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACT 820 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 819 TCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||||||||| |||||| || || || || || ||||| || || | Sbjct 1684 TCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 1625 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | || ||||| ||| | || | | || || || || || Sbjct 1624 CAGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGG 1565 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || ||||| | || | |||||||| | || || Sbjct 1564 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCAC 1505 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || ||||| || | ||||||||| || |||||||| Sbjct 1504 TTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCAT 1457 >seq1456 Length=293654 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||||||| | || || ||||| ||||| || ||||| || || | Sbjct 120102 CCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120043 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || |||||||| | || | | ||||| || || || Sbjct 120042 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGG 119983 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || || || | || | ||||| || | || ||| Sbjct 119982 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACT 119923 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || ||||| || | |||||| || || |||||||| Sbjct 119922 TCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCAT 119876 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| || ||||| || || ||| || || || ||||| || || | Sbjct 119646 CCTCCACGCAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 119587 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | || | | ||||| || || || Sbjct 119586 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 119527 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || || ||| |||| | || || || | || ||| Sbjct 119526 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACT 119467 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || |||||||||||||| Sbjct 119466 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || |||||||||||| || || ||| || || || ||||| || || | Sbjct 120559 TCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 120500 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || | |||||||| || | || | | || || || || || Sbjct 120499 CAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGG 120440 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || ||||| | || | ||||| || | || || Sbjct 120439 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAAC 120380 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | |||||| || || |||||||| Sbjct 120379 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 120332 >seq1001 Length=3733086 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || |||||||||||| || || ||| || || || ||||| || || | Sbjct 1254408 TCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1254349 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || ||||| ||| | || | | ||||| || || || Sbjct 1254348 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGG 1254289 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| | || ||||| | || | ||||| || | || || Sbjct 1254288 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAAC 1254229 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| | ||| || || || |||||||| || Sbjct 1254228 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATATT 1254178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208364265428