Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1456 149 6e-31 seq317 132 5e-26 seq1446 127 2e-24 seq1001 127 2e-24 seq2197 93.3 4e-14 >seq1456 Length=293654 Score = 149 bits (164), Expect = 6e-31 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| ||| | || || |||| Sbjct 120307 ATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCT 120249 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | ||||| ||||||||||| || |||||||| |||||||| ||||| Sbjct 120248 GCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCT 120189 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| | |||||||| |||| ||||| ||| || || | Sbjct 120188 TGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTCCCTG 120129 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||| || || || || ||||||||| || Sbjct 120128 TCAGGGTCTTCACAAAGATCTGCATGCCT 120100 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 119162 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 119104 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 119103 CAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCT 119044 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||||| ||||| || || | ||||| ||| ||||| ||||| | Sbjct 119043 TGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 118984 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 118983 TTTTCACAAAGATCTGCATG 118964 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 120073 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 120015 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 120014 CAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCT 119955 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| ||| ||||| || || | Sbjct 119954 TCACGTTCTCGATGGTGTCTGACGGCTCAACTTCAAGAGTGATGGTCTTGCCTGTGAGGG 119895 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||||||||||||| Sbjct 119894 TTTTGACGAAAATCTGCATG 119875 Score = 131 bits (144), Expect = 2e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| || Sbjct 119384 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCA-TCTTCCAGCTGCTTGCCGGCAA 119326 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| ||||||||||| || |||||||| |||||||| |||||| ||||| | Sbjct 119325 AGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGT 119266 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||| | ||||||| ||||| || || | ||||| ||| ||||| || || ||||| | Sbjct 119265 TCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGA 119206 Query 133648 CGAAAATCTGCATG 133661 |||| ||||||||| Sbjct 119205 CGAAGATCTGCATG 119192 Score = 129 bits (142), Expect = 6e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 119845 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 119787 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 119786 CAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCT 119727 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||||| ||||| || || | ||||| ||| ||||| || || | Sbjct 119726 TGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGG 119667 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 119666 TCTTCACAAAGATCTGCATGCCT 119644 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || || ||| | | | || || ||||||||||| || Sbjct 119611 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCAGCAA 119553 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| | | Sbjct 119552 AGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACAT 119493 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 |||| || || | |||||||| || | ||||| ||| ||||| || || || || | Sbjct 119492 TTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 119433 Query 133648 CGAAAATCTGCATGGCT 133664 | || ||||||||| || Sbjct 119432 CAAATATCTGCATGCCT 119416 >seq317 Length=4125 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| | | | || || |||| Sbjct 748 ATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 690 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | ||||| ||||||||||| || |||||||| |||||||| ||||| Sbjct 689 GCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCT 630 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||||| ||||| || || | ||||| ||| ||||| | Sbjct 629 TGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAG 570 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 569 TCAGGGTCTTCACAAAGATCTGCAT 545 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || ||||| ||| || ||| | | | || || | || Sbjct 976 ATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAACT 918 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | ||||| ||||||||||| || |||||||| |||||||| ||||| Sbjct 917 GCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCT 858 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 857 TGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGCCTG 798 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || ||||| ||||||||| Sbjct 797 TGAGGGTCTTCACGAAGATCTGCATG 772 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 1197 GTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCTGCTTGCC 1139 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||| ||||| || |||||||| |||||||| |||||| ||| Sbjct 1138 GGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1079 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| | ||||| || || | ||||| ||| ||||| ||||| || Sbjct 1078 GACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGCCTGTCAGGGT 1019 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1018 CTTCACGAAGATCTGCATG 1000 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| ||| || ||| | | | || || || Sbjct 1434 AAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCAAG 1376 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| ||||| ||||| || |||||||| |||||||| ||| Sbjct 1375 CTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGAT 1316 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| | ||||| || || | ||||| ||| ||||| Sbjct 1315 CTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTGCC 1256 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 1255 TGTGAGGGTCTTCACGAAGATCTGCATG 1228 >seq1446 Length=3482675 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | || || ||||||||||| ||| | || Sbjct 1542310 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCGGCGAAGAT 1542252 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 || ||||||||||| || |||||||| |||||||| |||||| ||| | | ||| Sbjct 1542251 CAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTC 1542192 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||| | |||||||| |||| ||||| ||| ||||| ||||| || || ||||| Sbjct 1542191 GATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1542132 Query 133652 AATCTGCAT 133660 |||||||| Sbjct 1542131 GATCTGCAT 1542123 >seq1001 Length=3733086 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| ||| || ||| | | | || || || Sbjct 1254386 AAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAG 1254328 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 1254327 CTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 1254268 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||||| ||||| || || | ||||| ||| ||||| Sbjct 1254267 CTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTTGCC 1254208 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 1254207 AGTCAGGGTCTTCACGAAGATCTGCAT 1254181 >seq2197 Length=5472366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 |||||| ||| ||||||| |||||||||| ||| || ||||| || ||||| ||| Sbjct 5039041 CTCATCTGGGCTTGTGTACTCCACGATCTCGGTGCAGAGGTTGCTACACTTGATGGTGCC 5038982 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 | ||||| || || ||||| |||||| |||||||||||||||||||| || Sbjct 5038981 GAGGTTCTGCTGGTTAGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGG 5038928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406853309920