Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq317 109 5e-19 seq1456 93.3 4e-14 seq1001 89.7 5e-13 >seq317 Length=4125 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| ||| | | ||||||| || || |||||||||||| || ||| Sbjct 1678 ACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 1619 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || |||| | |||| ||||||||||| ||||| || ||||| Sbjct 1618 GCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCC 1559 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||||||||| | Sbjct 1558 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAG 1499 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| ||||| | ||| ||||||||| Sbjct 1498 GGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||| || | ||||||| || || |||||||||||| || ||| Sbjct 1222 ACGCAGACGGAGAACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 1163 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| ||||||||||| ||||| || ||||| Sbjct 1162 GCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCC 1103 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| ||||| | Sbjct 1102 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAG 1043 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 1042 GGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| ||| | | |||||||||| || |||||||||||| || ||| Sbjct 994 ACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 935 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | | |||| |||||||| || ||||| || ||||| Sbjct 934 GCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCC 875 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | ||| | || || | ||||| ||||| | Sbjct 874 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAG 815 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | ||| ||||||||| Sbjct 814 GGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||| || || |||||||||||| || ||| Sbjct 1450 ACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 1391 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| ||||||||||| ||||| || ||||| Sbjct 1390 GCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCC 1331 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| ||||| | Sbjct 1330 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAG 1271 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | ||| ||||||||| Sbjct 1270 GGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| || | ||| | | | |||||||| || ||||||||||| || ||| Sbjct 766 ACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 707 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| |||||||| || ||||| || ||||| Sbjct 706 GCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCC 647 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| ||||| || || | Sbjct 646 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAG 587 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | || |||||||| Sbjct 586 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 >seq1456 Length=293654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| || | ||| | | | |||||||| || ||||||||||| || ||| Sbjct 120325 ACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 120266 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| |||||||| || ||||| || ||||| Sbjct 120265 GCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 120206 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||||||| |||| Sbjct 120205 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAG 120146 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || ||||| || || | || ||||||||| || Sbjct 120145 GGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATGCCT 120100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || || |||||||||||| || ||| || |||||| ||||| || |||| | | Sbjct 119384 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 119325 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||| || ||||| || ||||| || || || || || || | | Sbjct 119324 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 119265 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||| |||| ||||| ||||| | || | || || || || || ||||| | Sbjct 119264 CTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGAC 119205 Query 132112 GAAAATCTGCATG 132124 ||| ||||||||| Sbjct 119204 GAAGATCTGCATG 119192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| || | || | | | |||||||| || ||||||||||| || ||| Sbjct 120097 ACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 120038 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 120037 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCC 119978 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || || | |||||| ||||| | Sbjct 119977 CTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACTTCAAG 119918 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || ||||| | ||||||||||||| Sbjct 119917 AGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||| || || |||||||||||| || ||| Sbjct 120553 ACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 120494 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | |||||| |||| |||| ||||||||||| ||||| || ||||| Sbjct 120493 GCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATGCC 120434 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| || |||| Sbjct 120433 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACCTCGAG 120374 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| ||||| | ||| ||||||||| Sbjct 120373 GGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || || ||||||||||| || ||| || |||||| ||||| || || | | | Sbjct 119611 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 119552 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||| || ||||| || ||||| || || || || || |||| | Sbjct 119551 GATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 119492 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 ||| | ||||| | |||||||||||| | || | || || || || || || || | Sbjct 119491 TTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 119432 Query 132112 GAAAATCTGCATGACT 132127 || ||||||||| || Sbjct 119431 AAATATCTGCATGCCT 119416 >seq1001 Length=3733086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||| || || |||||||||||| || ||| Sbjct 1254402 ACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 1254343 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || ||||| Sbjct 1254342 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCC 1254283 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| ||||| || || | Sbjct 1254282 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAG 1254223 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 1254222 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1254181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597449766880