Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1531 286 4e-72 seq1224 125 8e-24 >seq1531 Length=8964412 Score = 286 bits (316), Expect = 4e-72 Identities = 454/643 (71%), Gaps = 10/643 (2%) Strand=Plus/Minus Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || ||||| || || |||||||| ||||||||||| ||||||||||| ||||| || || Sbjct 377456 TGATTGAGATACACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCT 377397 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | |||||| | ||| ||||| || || ||||||||| |||||||| || || || Sbjct 377396 GTGATGTGGGCTATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCG 377337 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||||| ||||| || || | |||||||||||| ||||||||||| ||||| |||||| Sbjct 377336 AGGCCAATGTCTCCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAA 377277 Query 147112 AACTGG-CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCA 147170 ||||| || ||| ||||||| || ||||||||||| ||||| ||| | |||||||| Sbjct 377276 AACTGCACAAAGG-TGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCA 377218 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 || || | | | || |||| | |||| |||| || | ||| ||| Sbjct 377217 CGCGGATATGATTATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGC 377158 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAA 147290 ||||||||||| || || ||| ||||| || ||| || || ||||| Sbjct 377157 TAGCTGGTCCACACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAA 377098 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCT--TTCTGTGCGAGAAG 147348 ||||||||| |||||||| || | || |||||||| || || | || || | Sbjct 377097 GTGCCTCCATTGGAAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAG-AC 377039 Query 147349 CCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCG 147408 | |||| | | | || || | || |||| || ||||| || ||| ||| | Sbjct 377038 CACGCCTG-TCCAAGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCA 376980 Query 147409 GAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCC 147468 || || ||||| | || ||| |||||||| | ||||||||| ||||| || | |||||| Sbjct 376979 GAAAGTTCCTTGGCGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCT 376920 Query 147469 CTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGA--ATACCTCG 147526 ||||| || || | ||| ||||| |||| ||| ||||| ||||| | || ||| | Sbjct 376919 CTCCAGAACACACGCTTTGTGGTGAGCAAGGGAAACTG--CCCTCTGAGACTATAGCGAC 376862 Query 147527 CCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 |||| | ||||| ||||||| || || || || || | ||| Sbjct 376861 ACTGGGCACCAAAAACAGACAAGGTCCCTGTTCCTGTACGGTC 376819 >seq1224 Length=3633418 Score = 125 bits (138), Expect = 8e-24 Identities = 129/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | ||||| | |||||||||||| || ||||||||||| |||||||| Sbjct 3005373 CTTGAGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAA 3005314 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || || ||| |||| ||||| | |||||||||||| ||||| || || |||| Sbjct 3005313 GGGTACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTT 3005254 Query 147102 GGCCACGTAAAACTGG-CACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||| || ||| |||||| || |||| |||||| Sbjct 3005253 ACATACATAGAACTGGACAAAGG-CGTGGCAGGGTGGCAACGCCAT 3005209 Score = 104 bits (114), Expect = 3e-17 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||||||||||||||||||||||||||| || || ||||| || || ||| Sbjct 3004518 GCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCCTCCTCATAGTG- 3004460 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | || || | ||||| || || || | || || | ||||||||||||| ||| Sbjct 3004459 GCTCAGTCCAC--GCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCAGATGTGCACG 3004402 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCC 147459 ||| | || || || | | || ||||||| || ||||| | |||||||| Sbjct 3004401 TTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAAGAGCTCCTCA 3004342 Query 147460 AAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTG 147506 |||||||||||||| || | ||| |||||||||| ||| ||||| Sbjct 3004341 GCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTG 3004295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583471166371200