Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1531 320 2e-82 seq1648 170 3e-37 >seq1531 Length=8964412 Score = 320 bits (354), Expect = 2e-82 Identities = 619/901 (69%), Gaps = 13/901 (1%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| || ||||| || ||||| || || || ||||| || || || | ||||| Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT---AGTTGCATTATAtttttttttA 39427 |||| || || || |||||||| ||||| || || ||| | || || || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGT-GTTGTAAATCTTGCTGCA 403429 Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487 ||| || ||| | |||||||||||| ||||| || || || |||||||| || Sbjct 403428 CATC--AAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCT 403371 Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT 39547 |||||| || || || || || || || || || || | |||||||| || || | Sbjct 403370 TGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTG 403311 Query 39548 ACGGCCTCTGT-TATTATCGATGTTACTACCT-CATCACTCGGTGGATGCAATAAATGTT 39605 ||||| |||| ||| ||| || | || || | || || || | | | || Sbjct 403310 ACGGCA-CTGTCTATAATCTG-GTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGC 403253 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 ||||||| | ||||| || ||| || | ||||||||||| || || | ||||| | Sbjct 403252 TAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGG 403193 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 | || || || || ||||| | || | ||| || | ||| ||||| || ||||| || | Sbjct 403192 AGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACC 403133 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TA 39784 |||| || ||||| ||||| || ||||| || ||||| | | || || || | | | Sbjct 403132 CAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTC 403073 Query 39785 TCAT-TATGTA-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 || | | | ||||| | | ||||| ||||| ||||||||||||||||| | || | Sbjct 403072 GCAGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCT 403013 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || |||||||| |||| | ||| |||| ||| | || || || || || || | Sbjct 403012 CGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGA 402953 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 |||| |||||||| ||||||||||| ||||| || ||||| || || || || || || | Sbjct 402952 GACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGG 402893 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 | || || | ||| |||||| | ||||| || ||| ||| ||| | || || |||| Sbjct 402892 CCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCAT 402833 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 ||||||| ||||| |||||||| | | || || || | |||||| | | || | Sbjct 402832 CACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGAC 402773 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||| | | | || || ||| |||||||| || | |||||| || |||||| Sbjct 402772 TCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCA 402713 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 | ||||| ||||||||| ||| || || | | ||||| ||||| || || || | || Sbjct 402712 CGGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGAT 402653 Query 40203 T 40203 | Sbjct 402652 T 402652 >seq1648 Length=77580 Score = 170 bits (188), Expect = 3e-37 Identities = 341/501 (68%), Gaps = 7/501 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| ||||| ||| | || | ||||| ||||| || | || || | | || ||||| Sbjct 8018 TTTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATT 8077 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAAATCCTAATTCTGAA 39442 |||||| || |||||||| || || || ||| || | | | | |||| Sbjct 8078 TTCCATAAAGTCAAACGGGTT--TTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCC 8135 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | || | ||||| ||||| || ||||| |||||||||| | | ||||| || || Sbjct 8136 AGCAGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATC 8195 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | | || | | |||||||| || ||||| | ||||| ||||||| || | Sbjct 8196 ATGTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACG 8255 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 ||| ||| ||| || || || || || | || |||||||||| | ||||||| Sbjct 8256 ATCTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTTAAACAACAGGCAGGCG 8315 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| || | |||||| || | |||||||| ||| || || || || || || ||| Sbjct 8316 AACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGC 8375 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || || || || || || ||||| || ||||||||||| || || || ||||||| || Sbjct 8376 ATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCC 8435 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TG--TATCCAC 39799 || || || || || || || || | ||| ||| | || || || ||| || |||||| Sbjct 8436 TCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCAC 8495 Query 39800 TTCTGTGCCCAATCAGCTTTC 39820 | | | ||||| || || ||| Sbjct 8496 TGCAGCGCCCAGTCCGCCTTC 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888982681120