Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1531 226 2e-54 >seq1531 Length=8964412 Score = 226 bits (250), Expect = 2e-54 Identities = 608/908 (67%), Gaps = 40/908 (4%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | ||||| || || | || ||||| ||| |||||||| || || |||| Sbjct 402658 TTCGTCATCTTTCCTATACAGAACCACGACATCTGGTTCATGTACAAGAAGGCCGTGGCG 402717 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||| |||||| | || ||||| || | ||| ||||| | ||||||| | | | Sbjct 402718 TCATTCTGGACAACGGAGGAAGTAGACATAGGTAAGGACTTGGACCATTGGA--GGAGTC 402775 Query 43820 AAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || |||| |||||||| || || | ||||||| || ||||| || || || | Sbjct 402776 TCACTGACAACGAAAAACACTTCATCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATG 402835 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAAGCA 43936 | || |||| ||| ||| |||| || | || ||| || || ||||| | || || Sbjct 402836 GTATCGTCAGTGAGAATCTGGT-AGAGAGATTCTACAAAGAGGTGCAATTGACCGAGGCC 402894 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | || || ||||| || || |||||||| || || || ||||| |||||||||||||| Sbjct 402895 AGGTGCTTCTATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTC 402954 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAG---AAGCATCGATTGTTTAATGCGATA 44053 |||| || || ||||| | ||| ||| ||| ||||||| |||||||||| || Sbjct 402955 TTGATCGACACCTACATTGAGGATCCGCATGAGAAAAAGCATC---TGTTTAATGCAATC 403011 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTA-----AATGGATAAATT 44108 || || |||| | || | || || || |||||||| | | |||| | | Sbjct 403012 GAGACCACACCTTGTGTAAAGAAGAAGGCTGAGTGGGCCCTCAGGTGGATTGGAGACCTG 403071 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | | | ||||||| ||||| | || || || |||| ||||||||| || || || | Sbjct 403072 CGA--GCCACTTTTGGGGAACGTGTGGTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCT 403129 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||| || ||||| ||||| ||||| |||| |||||||| ||| |||| | Sbjct 403130 CTGGGTCCTTTGCAGCTATATTCTGGTTGAAGAAGAGAGGATTGATGCCAGGGCTGACTT 403189 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || || ||| | || || | ||||| || | || || ||||| || || | Sbjct 403190 TCTCCAACGAGCTGATCAGCAGAGATGAGGGGATGCACACTGAGTTTGCCTGTCTGATGT 403249 Query 44289 TTGGATATCTAGGAGACGATAAGCC-TTCATGTAAGACAATTACAGATATTGTTGTAGAG 44347 || | | || || | | | ||| | | ||| | | || | ||| | | | || Sbjct 403250 TTAGCCACCT-GGTTA--ACAGGCCAAGCGAGGCAGATATTCAC-CAGATTATAG-ACAG 403304 Query 44348 -GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 || || ||||| || ||||| ||| ||||| || | || || || | || || || Sbjct 403305 TGCCGTCAAGATTGAGCAAGAGTTTTTGACAGACGCCCTTCCCGTGAAGCTGATTGGGAT 403364 Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA-AC 44465 |||| || ||||||| || |||||||| | | |||||| | || || ||| || Sbjct 403365 GAATCAAGACCTGATGAAACAGTATATTGAGTTTGTAGCAGATAGATT--GTTGGGAGAC 403422 Query 44466 TGGGT-TGC-----GATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATA 44519 | | | ||| ||| ||| | | || ||||||| ||||| || ||||| || | Sbjct 403423 TTGATGTGCAGCAAGATTTACA--ACACTG---AAAACCCCTTTGACTTCATGGAGAACA 403477 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGG 44579 | || |||| ||||| | ||||| ||||| || || ||||| || ||| |||| Sbjct 403478 TCTCCCTGGAGGGCAAGAGCAACTTCTTTGAGAAGAAGGTGGGAGAGTACCAGAAGATGG 403537 Query 44580 GCGTCATG 44587 | || ||| Sbjct 403538 GGGTGATG 403545 Score = 132 bits (146), Expect = 4e-26 Identities = 249/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 41010 ATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCAT 41069 ||||| | | ||||||||||||| | ||||| | ||||| |||| || || || Sbjct 377203 ATAATCATATCCGCGTGGAACCCACCAGACGTGCCCAATATGGCGCTGCCTCCCTGCCAC 377262 Query 41070 TTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 || ||| |||||||||||||| | || || || || ||||| |||| || | || Sbjct 377263 ACCTT-TGTGCAGTTTTACGTTTGTGACGGCGAGCTCTCGTGTCAGCTGTACCAGCGCTC 377321 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 || ||||| || || || || ||||| ||||| || || || ||| || || ||||| Sbjct 377322 CGGAGACATTGGCCTCGGCGTTCCGTTCAACATCGCCAGCTACAGTCTCCTGACCTATAT 377381 Query 41189 GATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACA 41248 ||| || ||| | || |||| ||||| || ||||| ||||| | ||||| | || Sbjct 377382 GATAGCCCACATCACAGGACTAAAGCCTGGGGACTTTGTACACACCCTGGGAGACGCGCA 377441 Query 41249 TATTTACATTAATCACATAGA-GCCGTTAACAGAACAACTGACACGAAAACCTAGACCAT 41307 | | || | ||||| || || || ||||| || || | | |||| || |||| | Sbjct 377442 TGTGTATCTCAATCATATCGACGCTCTTAAC-GAGCAGGTAAAGAGAAATCCACGACCTT 377500 Query 41308 TTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATT 41367 |||| | || || |||||| || |||||||||||||| || | |||| |||| Sbjct 377501 TTCCCATCCTCAACATCAAACGCAAAGTGGAAAACATTGATGACTTCAGGTTCGAGGATT 377560 Query 41368 T 41368 | Sbjct 377561 T 377561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444820059540