Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq317 114 1e-20 seq1456 113 4e-20 seq1446 93.3 4e-14 >seq317 Length=4125 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| ||| | || || ||||| || || ||||||||| Sbjct 1001 TGCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGG 942 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| | ||| || || || | ||||||||||| || || |||| Sbjct 941 ACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 882 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | |||| | ||||| | |||| ||| Sbjct 881 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGC-TCA 823 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| || || || ||||| ||||| ||||| Sbjct 822 ACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || || || || || ||||||||| Sbjct 1229 TGCCACCACGCAGACGGAGAACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGG 1170 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || ||||| | |||||||||||||| || || | Sbjct 1169 ACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGG 1110 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | | || | ||||| | |||| ||| Sbjct 1109 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGC-TCA 1051 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| ||||| || ||||| ||||| ||||| Sbjct 1050 ACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 1001 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| ||||| || | || || || || || ||||||||| Sbjct 1457 TGCCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 1398 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || ||||| | |||||||||||||| || |||| Sbjct 1397 ACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCG 1338 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | | || | ||||||| |||| || Sbjct 1337 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGC-TCG 1279 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| || || || ||||| ||||| ||||| Sbjct 1278 ACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 1229 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||| ||| | || || || || || || ||||||||| | Sbjct 1683 CCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1624 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| | ||| || ||||| | |||||||||||||| || || || Sbjct 1623 AGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGG 1564 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | |||| || || Sbjct 1563 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGC-TCCAC 1505 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 1504 TTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCAT 1457 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| || | ||| | || || ||||| || || |||||||| Sbjct 773 TGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 714 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || || || | ||||||||||| || || |||| Sbjct 713 ACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 654 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | || | ||||| | ||||| | Sbjct 653 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCT-CG 595 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || | ||||| ||||| || ||||||||||| |||||| Sbjct 594 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 544 >seq1456 Length=293654 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || || |||| |||| ||||| || | || || || || || ||||||||| Sbjct 120561 TTTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 120502 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | |||| | ||||| | |||||| |||||| | |||||||||||||| || || Sbjct 120501 GACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGT 120442 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | ||||| || || ||||||| || | | | || | ||||||| |||| || Sbjct 120441 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGC-TC 120383 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 120382 AACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 120332 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| || | ||| | || || ||||| || || |||||||| Sbjct 120332 TGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 120273 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || || || | ||||||||||| || || || | Sbjct 120272 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGG 120213 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||||| | || | Sbjct 120212 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCA 120153 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || ||||| || ||||||||||| ||||| Sbjct 120152 CCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 120104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||| || | |||| | ||||| ||||| || ||||| | Sbjct 119383 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 119324 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||| || || || || | ||||| || || ||||||| || | | | Sbjct 119323 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 119264 Query 27177 TCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || | |||||| | |||| || ||||| || || || | ||||| || || ||||| || Sbjct 119263 TCGATAGTGTCGGATGGC-TCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGAC 119205 Query 27236 AAAGATTTGCAT 27247 ||||| ||||| Sbjct 119204 GAAGATCTGCAT 119193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| || | || | || || || || || || |||||||| Sbjct 119193 TGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 119134 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || || ||| | || |||||||| || || || | Sbjct 119133 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 119074 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | || | ||||| | ||||| | Sbjct 119073 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCT-CG 119015 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAA 27257 || || || || || | ||||| ||||| |||||||||||||| ||||| | | || || Sbjct 119014 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT-GATTCTGAA 118956 Query 27258 AAT 27260 ||| Sbjct 118955 AAT 118953 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| |||| || | ||||| || | || || || || || |||||||| Sbjct 119648 TGCCTCCACGCAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAG 119589 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || || || | ||||||||||| || || || | Sbjct 119588 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTG 119529 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| |||| |||| | || |||| | || | Sbjct 119528 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCA 119469 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || || | ||||| || || || |||||||| || ||||| Sbjct 119468 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| || | || | || || || || || || |||||||| Sbjct 119876 TGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 119817 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || || ||| | || |||||||| || || || | Sbjct 119816 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 119757 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | | || | ||||| | ||||| | Sbjct 119756 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCT-CG 119698 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| || || || ||||||||||| ||||| Sbjct 119697 ACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 119648 >seq1446 Length=3482675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||| || | |||| | ||||| ||||| || |||||| | || Sbjct 1542310 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATC 1542251 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 || ||||| || || || || | ||||| || || ||||||| |||| | || Sbjct 1542250 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCG 1542191 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||||| | || || || || || || | ||||||||||| || ||||| ||| Sbjct 1542190 ATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 1542131 Query 27240 ATTTGCATA 27248 || |||||| Sbjct 1542130 ATCTGCATA 1542122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424922447126496