Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1531 105 2e-17 >seq1531 Length=8964412 Score = 105 bits (116), Expect = 2e-17 Identities = 217/317 (68%), Gaps = 7/317 (2%) Strand=Plus/Plus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329 || |||||| | || || | ||| | | |||||||| ||||||||| | | | || Sbjct 402655 CGCTTCGTCATCTTTCCTATACAGAACCACGACATCTGGTTCATGTACAAGAAGGCC-GT 402713 Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 ||| || ||||| | |||||| | || | |||||||||| | |||||| || Sbjct 402714 GGCGTCATTCTGGACAACGGAGGAAGTAGACATAGGTAAGGACTTGGACCATTGGAG-GA 402772 Query 443390 ACGACTATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAG 443449 | || || | | ||| | ||| |||| | ||| ||||| ||||||||| | || Sbjct 402773 --GTCTCACTGACAACGAAAAACACTTCATCAAGTACATTTTGGCATTCTTTGCAGCTAG 402830 Query 443450 CGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGA 443509 || ||||||||| ||||||||||||| | | |||||| || ||| | ||||| Sbjct 402831 TGATGGTATCGTCAGTGAGAATCTGGTAGAGAGATTCTACAAAGAGGTGCAATTGACCGA 402890 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 |||| | | |||||| | ||||| || || |||||||| || | || | ||||| Sbjct 402891 GGCCAGGTGCTTCTATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAG 402950 Query 443570 TCAGTTGATCAAGACAC 443586 || |||||| ||||| Sbjct 402951 TCTCTTGATC--GACAC 402965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588289030919060