Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1648 111 2e-19 seq1531 105 8e-18 seq2197 86.0 8e-12 >seq1648 Length=77580 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||| ||||| ||| | ||||||||||| || |||||||| |||||| ||| || Sbjct 8312 GGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCC 8371 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| || || || ||||| | ||||||||| ||| |||||| || |||||||||| Sbjct 8372 TGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGAC 8431 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAA 130193 |||||||| ||||| || | || ||||| | ||| | | | |||| | | | Sbjct 8432 TCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTG-GTGTCTTTACTGGCGA 8490 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 ||||| || |||||| | |||||| | | ||| |||| ||||| Sbjct 8491 TCCACTGCAGCGCCCAGTCCGCCTTCCTGCGCACACAGGGGAGGGTCT 8538 >seq1531 Length=8964412 Score = 105 bits (116), Expect = 8e-18 Identities = 193/277 (70%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||||||||| ||| | ||||| || | | ||| || || || ||||| ||| || Sbjct 403239 GGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCC 403180 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| | || | ||||||||||||||| || || ||| || |||||||| ||||| Sbjct 403179 TGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGAT 403120 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTAT-CA 130192 ||| |||||| ||||| |||| | ||| || |||| || || | || | || Sbjct 403119 CCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAA--AGTGGCTCGCAGGTCTCCA 403062 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | |||| | | ||||||| ||||| |||| | ||| || ||||| ||| || | | Sbjct 403061 ATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTA 403002 Query 130253 AAGAGTTCCTTCTTTTCTGAT--GGATCTTTGATGTA 130287 || || | || |||||| || ||||| | ||||| Sbjct 403001 AACAGATGCT--TTTTCTCATGCGGATCCTCAATGTA 402967 >seq2197 Length=5472366 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| |||||| || |||||| Sbjct 5042622 TAGATGTTGCTGGTGTAAGCCTCGATGGACTCGTTGTTCCCCAGGATTTGTGCAGTGGAG 5042563 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| | |||||||| Sbjct 5042562 GCTGTGGGCATGGGGGCCAACAACAGGCTGTT 5042531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417358144480