Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1531 140 4e-28 >seq1531 Length=8964412 Score = 140 bits (154), Expect = 4e-28 Identities = 518/797 (65%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 94468 AAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATC 94527 ||||| |||||| |||||| || ||| | ||| || ||||| | ||||| || ||||| Sbjct 402751 AAGGACTTGGACCATTGGAGGAGTCTCACTGACAACGAAAAACACTTCATCAAGTACATT 402810 Query 94528 CTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCT 94587 ||||||||||||| | ||||| || || ||||||| | | | || Sbjct 402811 TTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAGTGAGAATCTGGTAGAGAGATTCTAC 402870 Query 94588 GATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAG--TGTCATAATGAAA 94645 | |||||||||| | || || || | |||||||| | ||| || ||| ||| | Sbjct 402871 AAAGAGGTGCAATTGACCGAGGCCAGGTGCTTCTATGGCTTCCAGATTGCCAT--TGAGA 402928 Query 94646 TGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGA 94705 | ||| || | |||||| | || |||| || ||| ||||| ||||| Sbjct 402929 ACATCCATTCTGAAATGTACAGTCTCTTGATCGACACCTACATTGAGGATCCGCATGAGA 402988 Query 94706 AGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGG 94765 | ||||| || ||| | || ||| | || || ||| | | ||||| || || |||| Sbjct 402989 AAAAGCATCTGTTTAATGCAATCGAGACCACACCTTGTGTAAAGAAGAAGGCTGAGTGGG 403048 Query 94766 CTATGAAGTGGTTTGATACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTG 94822 | | | |||| ||| | | ||| || |||| || || | | || || | Sbjct 403049 CCCTCAGGTGGATTGG---AGACCTGCGAGCCACTTTTGGGGAACGTGTGGTTGCTTTCG 403105 Query 94823 CGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAG 94881 | ||| || || ||||| |||||||| ||||| ||| ||||| | ||| | |||||| Sbjct 403106 CAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTT-TGCAGCTATATTCTGGTTGAAGAAG 403164 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 |||| | |||||||| || |||||||||||||| ||| | || ||||| | Sbjct 403165 AGAGGATTGATGCCAGGGCTGACTTTCTCCAACGAGCTGATCAGCAGAGATGAGGGGATG 403224 Query 94942 CACCAAGAGTTTGCG-GTGGAACTTTTCAAATTATTGCGTATTAAACCAA-CGACTGAGA 94999 ||| |||||||| || | ||| | || || | |||| ||| ||| Sbjct 403225 CACACTGAGTTTGCCTGTCTGATGTTT-AGCCACCTGGTTAACAGGCCAAGCGAGGCAGA 403283 Query 95000 CTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCC 95059 |||||| ||| | | ||||| |||||||| ||| || | || |||| Sbjct 403284 -TATTCACCAGATTATAGACAGTGCCGTCAAGATTGAGCAAGAGTTTTTGACAGACGCCC 403342 Query 95060 TTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTAT 95119 |||| || || || |||||| || ||| | |||||||||| |||| Sbjct 403343 TTCCCGTGAAGCTGATTGGGATGAATCAAGACCTGATGAAACAGTATATTGAGTTTGTAG 403402 Query 95120 CTGATAGATTGTTGAAGCAGA-TCGGGGTGCCTCCA-ATTTGGAACTCCAAGAATCCATT 95177 | |||||||||||| | ||| | | |||| | | |||| ||| | | || || || Sbjct 403403 CAGATAGATTGTTG--GGAGACTTGATGTGCAGCAAGATTTACAACACTGAAAACCCCTT 403460 Query 95178 TGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGG 95237 |||||||||||||||||| ||| || || |||| |||||||| || |||| ||| || Sbjct 403461 TGACTTCATGGAGAACATCTCCCTGGAGGGCAAGAGCAACTTCTTTGAGAAGAAGGTGGG 403520 Query 95238 GGACTATGGCAAGATGG 95254 || || ||||||| Sbjct 403521 AGAGTACCAGAAGATGG 403537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243972925920