Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq317 150 5e-31 seq1456 141 3e-28 seq1531 111 5e-19 seq902 95.1 4e-14 seq2120 91.5 4e-13 seq1920 91.5 4e-13 seq1520 91.5 4e-13 seq890 91.5 4e-13 >seq317 Length=4125 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || ||||||||||| || |||||||| || || || || || Sbjct 775 CATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 716 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| ||||| ||||| || || Sbjct 715 AGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGG 656 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || ||||| || || | || ||||| || Sbjct 655 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTC 596 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 595 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || |||||||| || |||||||| || || || || || Sbjct 1003 CATGCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTC 944 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| | || || ||||||||||| ||||| ||||| || || Sbjct 943 GGACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 884 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || ||||| | |||||||| || Sbjct 883 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTC 824 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || | ||||| || || || || || || || |||||||| Sbjct 823 AACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || || || ||| || || || || || || Sbjct 1459 CATGCCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC 1400 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || || |||||||| ||||| || || || || Sbjct 1399 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGG 1340 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || || || | || ||||| || Sbjct 1339 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTC 1280 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || || || || || || |||||||| Sbjct 1279 GACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 1229 >seq1456 Length=293654 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || ||||||||||| || |||||||| || || || || || Sbjct 120334 CATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 120275 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| ||||| ||||| || || Sbjct 120274 AGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 120215 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || ||||| | || || || || Sbjct 120214 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTC 120155 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 120154 CACCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 120104 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || || || |||||||| || || || || || Sbjct 120106 CATGCCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 120047 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||| ||||| ||||| ||||| || || Sbjct 120046 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGG 119987 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || || || | || || || || Sbjct 119986 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTC 119927 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| || | ||||| || || || ||||| || ||||||||||| Sbjct 119926 AACTTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCAT 119876 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | ||||| | || ||||| ||| || || || || || || Sbjct 119650 CATGCCTCCACGCAGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTC 119591 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| ||||| ||||| || || Sbjct 119590 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 119531 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || ||||| ||||| | ||| || || || Sbjct 119530 TGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTC 119471 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || || || || ||||| |||||||| Sbjct 119470 CACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 >seq1531 Length=8964412 Score = 111 bits (122), Expect = 5e-19 Identities = 283/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 223703 GCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCA 223762 ||||| || || || | |||||||||| || | || || || || || | || Sbjct 403238 GCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCT 403179 Query 223763 GGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATA 223822 ||||| || |||||||| |||| ||| ||||| || ||| | || || ||||| || Sbjct 403178 GGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCAGAGAAAAAGATC 403119 Query 223823 CCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTGTCTCCTATC 223882 ||||| ||| || || || || | ||| ||||| | | |||||| ||| Sbjct 403118 CCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGCAGGTCTCCAATC 403059 Query 223883 CATTTTAATGCCCAATCTGCTTTTTTCTTAATACAAGAAAAATTTTCTAAAGCATTAAAC 223942 || | | ||||| || || || ||||| | ||||| | || | ||||||||| Sbjct 403058 CACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCGATTGCATTAAAC 402999 Query 223943 AACTTCGATTTCTCATTATGATCACTTATATATGTTTCTATTAATTGACTATACATTATT 224002 | | | |||||||| |||| || || || || || || |||| |||||| Sbjct 402998 AGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGACTGTACATTTCA 402939 Query 224003 GAATGTATATTTTCCATTGCTATTTGAAATCCATAAAATGCTTTTGCCTCTGCTATTTGT 224062 ||||| || || || || || || || || ||||| || | ||||| | | ||| Sbjct 402938 GAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTGC 402879 Query 224063 ACTTCTGTCATAAATCTTAATCCTAAATTCTCTAATACTATACCATCACTTGCCGCAAAA 224122 || ||| | ||||| | | | |||||| || ||||||||||| || ||||| Sbjct 402878 ACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCACTAGCTGCAAAG 402819 Query 224123 AATGCCAATAT 224133 |||||||| || Sbjct 402818 AATGCCAAAAT 402808 >seq902 Length=492455 Score = 95.1 bits (104), Expect = 4e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 64571 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 64630 Query 235950 CCCAGCATCTCCATACA 235966 ||| ||||||||| ||| Sbjct 64631 CCCCGCATCTCCAGACA 64647 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 53319 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 53260 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 53259 CCCCGCATCTCCA 53247 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 59809 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 59750 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 59749 CCCCGCATCTCCA 59737 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 60107 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 60048 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 60047 CCCCGCATCTCCA 60035 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 64842 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 64901 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 64902 CCCCGCATCTCCA 64914 >seq2120 Length=1502456 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1124042 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1123983 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1123982 CCCCGCATCTCCA 1123970 >seq1920 Length=1951925 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1697723 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1697664 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1697663 CCCCGCATCTCCA 1697651 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1700270 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1700211 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1700210 CCCTGCATCTCCA 1700198 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1701751 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1701810 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1701811 CCCCGCATCTCCA 1701823 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1703686 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1703745 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1703746 CCCCGCATCTCCA 1703758 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1705597 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1705656 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1705657 CCCCGCATCTCCA 1705669 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1706168 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1706227 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1706228 CCCCGCATCTCCA 1706240 >seq1520 Length=3135343 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1567088 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1567147 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1567148 CCCCGCATCTCCA 1567160 >seq890 Length=3798522 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 27143 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 27084 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 27083 CCCCGCATCTCCA 27071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515209592033324