Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1531 161 1e-34 seq2197 107 2e-18 seq1648 86.0 7e-12 >seq1531 Length=8964412 Score = 161 bits (178), Expect = 1e-34 Identities = 570/872 (65%), Gaps = 25/872 (3%) Strand=Plus/Plus Query 59561 CTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTG 59620 ||||||||||| | ||| || | ||| | |||| ||||| || | | |||||||| Sbjct 402666 CTTTCCTATACAGAACCACGACATCTGGTTCATGTACAAGAAGGCCGTGGCGTCATTCTG 402725 Query 59621 GTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGA 59680 | | ||||| | ||| | | ||| || | ||||| | |||| | || | Sbjct 402726 GACAACGGAGGAAGTAGACATAGGTAAGGACTTGGACCATTGGAGGAGTCTCACTGACAA 402785 Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 ||| | || ||||||||| | |||| ||||| || || |||||||| || || | Sbjct 402786 CGAAAAACACTTCATCAAGTACATTTTGGCATTCTTTGCAGCTAGTGATGGTATCGTCAG 402845 Query 59741 GGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTG-CCGAGGCCCGGTCGTTCT 59799 || ||| | | || || | ||| || || || |||| |||||||| ||| |||| Sbjct 402846 TGAGAATCTGGTAGAGAGATTCTACAAAGAGGTGCA-ATTGACCGAGGCCAGGTGCTTCT 402904 Query 59800 ACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATA 59859 | | | ||| || ||| ||||| || || | |||| ||| ||||||| | Sbjct 402905 ATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTGATCGACA 402964 Query 59860 AGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCG 59919 | | |||||||| | ||||| |||||| ||| || ||||| | || Sbjct 402965 CCTACATTGAGGATCCGCATGAGAAAAAGCATCTGTTTAATGCAATCGAGACCACACCTT 403024 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT--GAGTCCTG-GAGCATCATTTG 59976 || || | || || || |||||| | |||||| ||| |||| |||| | |||| Sbjct 403025 GTGTAAAGAAGAAGGCTGAGTGGGCCCTCAGGTGGATTGGAGACCTGCGAGCCACTTTTG 403084 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 ||||| | | ||||| ||| |||||||| ||||| |||||||| || || | Sbjct 403085 GGGAACGTGTGGTTGCTTTCGCAGCTGTGGAAGGGATCTTTTTCTCTGGGTCCTTTGCAG 403144 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 |||| |||||| | || ||| | || | ||||| || |||| ||||||||||||||||| Sbjct 403145 CTATATTCTGGTTGAAGAAGAGAGGATTGATGCCAGGGCTGACTTTCTCCAACGAGCTGA 403204 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTG 60155 | | | || ||||| | || |||||||| || | | | | | |||| | | Sbjct 403205 TCAGCAGAGATGAGGGGATGCACACTGAGTTTGC-CTGTCTGATGTTTAGCCACC--TGG 403261 Query 60156 GAAAAATGCCCTTCCAAG--GATATTCACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAG 60212 || | ||| | | | ||||||||| ||||| | | | || || ||| | ||| Sbjct 403262 TTAACAGGCCAAGCGAGGCAGATATTCACCAGATTATAGACAGTGC-CGTCAAGATTGAG 403320 Query 60213 AGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA---A 60269 ||||| | ||||| || ||||| || || || || ||| | | ||| Sbjct 403321 CAAGAGTTTTTGACAGACGCCCTTCCCGTGAAGCTGATTGGGATGAA---TCAAGACCTG 403377 Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 |||| ||||| ||| ||||||| || || | | ||| || | || | | || Sbjct 403378 ATGAAACAGTATATTGAGTTTGTAGCAGATAGATTGTTGG--GAGACTTGATGTGCAGCA 403435 Query 60330 --ATTTACGGC-GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAG 60386 |||||| | |||| ||||| || |||| ||||||| |||||| |||| || ||| Sbjct 403436 AGATTTACAACACTGAA-AACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGCAAG 403494 Query 60387 ACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||||| ||| || || || Sbjct 403495 AGCAACTTCTTTGAGAAGAAGGTGGGAGAGTA 403526 >seq2197 Length=5472366 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 ||||| || ||||||||||| ||||| || |||||| | | || || || || | Sbjct 5038357 AGGCCGGGACACTCGTGCGGACACATGAGCGTCCAGTCACCATTCTCTTCCACACGCTTC 5038298 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| |||||||||||||||| ||| ||| ||||| || ||| |||||| | Sbjct 5038297 ATGAACAGGTCCGGGATCCACATGGCGTAGAACAGGTCTCGTGCGCGCTGCTCCTCCTTC 5038238 Query 79444 CCCTGGTTCAGACGCAGC-TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| |||| || ||| || || || || | |||||| |||||||| |||||||| || Sbjct 5038237 CCCGTGTTCTTTCG-AGCGTCCAGGAACTCGAAGATGTCTGCGTGCCAAGGCTCCAGGTA 5038179 Query 79503 GATGGCGAACGAACCCTTGCGCT 79525 || ||||| | ||| ||||| Sbjct 5038178 CATAGCGAAGGCACCAGGGCGCT 5038156 >seq1648 Length=77580 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||| |||||||||| || || || ||| ||||||||||| || || || || Sbjct 8441 CGTGGAGGGAGTCTTCTTCTCAGGGTCATTTGCTGCCATTTTCTGGCTAAAGAAACGCGG 8382 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 || ||||| ||||||| ||||| || || || ||| || ||||||||| Sbjct 8381 GCTGATGCCAGGCCTGACCTTCTCAAATGAACTAATTAGTCGTGACGAGGGC 8330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548508975059520