Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1531 327 9e-85 seq1224 150 1e-31 >seq1531 Length=8964412 Score = 327 bits (362), Expect = 9e-85 Identities = 530/760 (70%), Gaps = 2/760 (0%) Strand=Plus/Minus Query 29782 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29841 ||||||||| | | ||||| || | | | ||||| | | || || | || |||| Sbjct 377562 GAAATCCTCGAACCTGAAGTCATCAATGTTTTCCACTTTGCGTTTGATGTTGAGGATGGG 377503 Query 29842 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGAC 29901 ||| |||| || | |||| | ||| || || | || | | || || || || Sbjct 377502 AAAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATACAC 377443 Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 || |||||||||||| |||| ||||| || || || | ||| || |||| ||| || || Sbjct 377442 ATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTAT 377383 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 ||| || || |||||| ||||||||||||||| || || || ||||| || ||||| || Sbjct 377382 CATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCTCC 377323 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG-ACACATGG 30080 || | |||||| ||||||||||||||||| ||||| | ||||||||||| ||| | || Sbjct 377322 GGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACA-AAGG 377264 Query 30081 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30140 |||||| ||||| || ||||| | || |||| |||||||| ||| | | ||| | Sbjct 377263 TGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATTA 377204 Query 30141 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30200 | | |||||| | |||| ||| ||||| || | | | | ||||| ||||| | Sbjct 377203 TCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTCCACAC 377144 Query 30201 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30260 | |||| |||||| | | | ||| | || || ||||| || |||||||| |||| Sbjct 377143 CTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATTGGA 377084 Query 30261 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320 | || || | || |||||||||||||| || || | | || | | ||||||| | Sbjct 377083 AGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCAAGA 377024 Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380 | |||| |||||||| || ||||| || | ||| || ||||| || || |||| || Sbjct 377023 ATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTCCTTGGCGT 376964 Query 30381 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30440 | || || || | |||||||| || ||||| || || || | |||| || || | || Sbjct 376963 TCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACACGCT 376904 Query 30441 TGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGG 30500 | || ||||| | ||||||||| || |||| | || | ||| | |||||| || | Sbjct 376903 TTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACCAAAAACAG 376844 Query 30501 ACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACC 30540 ||||| || || || || | ||||| | | | ||| || Sbjct 376843 ACAAGGTCCCTGTTCCTGTACGGTCTCTCTTTCTTTTTCC 376804 >seq1224 Length=3633418 Score = 150 bits (166), Expect = 1e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 ||| |||| ||||| || || |||||||||||||| |||||||| || || ||||||||| Sbjct 3004530 TCCTTGTATTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCC 3004471 Query 30287 TCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30345 || || ||| ||| | || | |||||||| ||||| | || || ||||||||||| Sbjct 3004470 TCCTCATAGTGGCTC-AGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCA 3004412 Query 30346 GATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 ||| | || || ||||| || ||| || ||||| || || ||||| ||||||| Sbjct 3004411 GATGTGCACGTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAA 3004352 Query 30406 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30465 |||||||| | || || ||||||| || | ||| || || || | ||||||||| || Sbjct 3004351 GAGCTCCTCAGCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTGCCC 3004292 Score = 145 bits (160), Expect = 6e-30 Identities = 131/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| | |||||||| |||||||||||||||||||||||||| |||||| Sbjct 3005369 AGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGT 3005310 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| ||| |||| ||||| | |||||| ||||||||||| || ||||||| | Sbjct 3005309 ACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACAT 3005250 Query 30062 ACGTAAAACT-GACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || |||| |||| | ||||||||| || || | ||||| Sbjct 3005249 ACATAGAACTGGACA-AAGGCGTGGCAGGGTGGCAACGCCAT 3005209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406298970996336