Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq317 138 7e-28 seq1456 120 2e-22 seq1001 114 8e-21 >seq317 Length=4125 Score = 138 bits (152), Expect = 7e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 1446 AGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1387 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || |||||||| || | |||||||||||| ||||| | |||||| Sbjct 1386 CCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGGATGCCCTCC 1327 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || |||||| ||| ||||||| ||| Sbjct 1326 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCGACTTCCAGGGT 1268 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 1267 GATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||| || || |||||| || ||||| || || || || || || Sbjct 1674 AGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1615 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || |||||||| || | |||||||||||| || || | |||||| Sbjct 1614 CCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCC 1555 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||||||||||| ||| Sbjct 1554 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGT 1496 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||| || || ||||||||| Sbjct 1495 GATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 1218 AGACGGAGAACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1159 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||||||||| || || | |||||| Sbjct 1158 CCATCTTCTAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 1099 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| ||||||| ||| Sbjct 1098 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGT 1040 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 1039 GATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||| || || ||| || || ||||| || || || || || || Sbjct 990 AGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 931 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || | |||||| ||||| ||||| | |||||| Sbjct 930 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCC 871 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| ||| ||||||| ||| Sbjct 870 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGT 812 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 811 GATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || ||| ||| || || ||||| || || || || || || Sbjct 762 AGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 703 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || | |||||| ||||| ||||| | |||||| Sbjct 702 CCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCC 643 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||| || || | ||| Sbjct 642 TTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGT 584 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | || |||||||| |||||||| || Sbjct 583 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATATT 542 >seq1456 Length=293654 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||||||||||| || ||||| || || || || || || Sbjct 119637 AGACGGAGAACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 119578 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 119577 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCC 119518 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || | | ||| || ||| ||||||||| | ||| Sbjct 119517 TTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTG 119458 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 119457 ATGGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCATG 119419 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 120549 AGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 120490 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| ||||| || || | |||||||||||| || || | |||||| Sbjct 120489 CCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCC 120430 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || |||||| ||| || || | ||| Sbjct 120429 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCTGATGGCTCAACCTCGAGGGT 120371 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||| || || ||||||||| Sbjct 120370 GATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 107 bits (118), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || ||||||||||||||||| || ||||| || || || | || || Sbjct 119409 AGACGGAGCAC-AAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGG 119351 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| ||||| || || | |||||| Sbjct 119350 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCC 119291 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| ||||| | ||| Sbjct 119290 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGT 119232 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||| || || ||||||||| Sbjct 119231 GATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCATG 119192 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || ||| ||| || || ||||| || || || || || || Sbjct 120321 AGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGA 120262 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 120261 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCC 120202 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| |||||| || | ||| Sbjct 120201 TTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGT 120143 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 120142 GATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 120103 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||| |||||| || ||||| || || || || || || Sbjct 119182 AGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 119123 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | |||||| Sbjct 119122 CCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCC 119063 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || || | || ||||| ||| || || | ||| Sbjct 119062 TTGTCTTGGATCTTG-GCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGT 119004 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||||||||| ||||||||| Sbjct 119003 GATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 118964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||| |||||| || ||||| || || || || || || Sbjct 119865 AGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 119806 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | |||||| Sbjct 119805 CCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCC 119746 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||| ||||| | ||| Sbjct 119745 TTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGT 119687 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 119686 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 119647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||||| ||| ||| || || ||||| || || || || || || Sbjct 120093 AGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 120034 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | |||||| Sbjct 120033 CCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCC 119974 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || |||||| ||| ||||| | || Sbjct 119973 TTGTCTTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACTTCAAGAGT 119915 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||| || |||||||||||| Sbjct 119914 GATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 >seq1001 Length=3733086 Score = 114 bits (126), Expect = 8e-21 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 1254398 AGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1254339 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| ||||| || || | |||||| Sbjct 1254338 CCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCC 1254279 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| || || | ||| Sbjct 1254278 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGT 1254220 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | || ||||| || |||||||| || Sbjct 1254219 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATATT 1254178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720747049764