Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1456 154 1e-32 >seq1456 Length=293654 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| ||||| |||||| | || || || || || || || || Sbjct 120331 CATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATC 120390 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || |||||||| || ||||| ||||| || || Sbjct 120391 AGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 120450 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | |||||||||||| |||||||| | ||| | ||||| ||||| Sbjct 120451 ACAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAA 120510 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||| ||| | || ||||| ||||| |||| ||||| Sbjct 120511 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 120558 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || |||||| | || ||||||||||| || ||||| Sbjct 119875 CATGCAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTC 119934 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || |||||||| || ||||| || || || || Sbjct 119935 AGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 119994 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || ||||||| | ||| | || || ||||| Sbjct 119995 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 120054 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || | || ||||| |||| || ||||| Sbjct 120055 CATCCAGAAAGAGTCCACCCTCCACCTTGTGCTGCGTCTGCGTGGAGGCAT 120105 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || || || |||||| | || || || |||||||| ||||| Sbjct 119419 CATGCAGATATTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCGTC 119478 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || || |||||||| || ||||| ||||| || || Sbjct 119479 AGATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCA 119538 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || ||||||| | ||| | || || ||||| Sbjct 119539 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 119598 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| || | || |||||| | ||| |||| || ||||| Sbjct 119599 CATCCAGAAGGAGAGCACTCTCCACTTGGTTCTCCGTCTGCGTGGAGGCAT 119649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434905852604160