Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1531 246 3e-60 seq1224 114 1e-20 >seq1531 Length=8964412 Score = 246 bits (272), Expect = 3e-60 Identities = 447/652 (69%), Gaps = 4/652 (1%) Strand=Plus/Plus Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 ||| | ||||| || || || |||||| | || || || || | ||| || || | Sbjct 376813 AAGAGAGACCGTACAGGAACAGGGACCTTGTCTGTTTTTGGTGCCCAGTGTCGCTATAGT 376872 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | || | ||||| |||| || || || ||||||| ||||| || || ||||| Sbjct 376873 CTCAGAGGGCAGTTTCCCTTGCTCACCACAAAGCGTGTGTTCTGGAGAGGGGTTGTCGAA 376932 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||| || |||||||| |||| | |||||| ||||||| || || | |||| Sbjct 376933 GAGCTCCTCTGGTTCGTTCGGGGCTCTACGAACGCCAAGGAACTTTCTGACAAAAAGGTG 376992 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTC 34385 | || ||||| || |||| || ||||| || |||||| ||| || | |||| Sbjct 376993 CATATATGGGATGCGAACGGTTCGCGAGAATTCTTGGACAGGCGTGGTCTGAACCATTAT 377052 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | ||||||| ||| ||||||| |||| || ||||| ||||| |||||||| ||||| | Sbjct 377053 G--AGGAGGGAGACCTGGGCCCCATCTATGGCTTCCAATGGAGGCACTTTGGAGCGGAAT 377110 Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 || || | | | ||||| ||||||| || | ||||||||| | || ||| Sbjct 377111 ATAAGGATAAAAACACTGACTACACGGGACAAGGTGTGGACCAGCTAGCCCAGGTCATCC 377170 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 ||||| | ||| ||||| ||||||| ||||| | || | |||||||||||| | Sbjct 377171 ACACCATCAAGAATGACCCTCATGACAGGAGGATAATCATATCCGCGTGGAACCCACCAG 377230 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 | | || |||||||| || || ||||||||| | || || ||||| | | Sbjct 377231 ACGTGCCCAATATGGCGCTGCCTCCCTGCCACACCTTTGTGCAGTTTTACGTTTGTGACG 377290 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||||| || || ||||| || || || || |||||||| || | || || ||||||| Sbjct 377291 GCGAGCTCTCGTGTCAGCTGTACCAGCGCTCCGGAGACATTGGCCTCGGCGTTCCGTTCA 377350 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 |||| || || ||| ||| || || || ||||| || || || || | |||| Sbjct 377351 ACATCGCCAGCTACAGTCTCCTGACCTATATGATAGCCCACATCACAGGACTAAAGCCTG 377410 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 |||| | || || || |||| || |||||| | || || || || ||||| Sbjct 377411 GGGACTTTGTACACACCCTGGGAGACGCGCATGTGTATCTCAATCATATCGA 377462 Score = 246 bits (272), Expect = 3e-60 Identities = 447/652 (69%), Gaps = 4/652 (1%) Strand=Plus/Minus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 ||||| || || || || | |||||| || |||| || || || | |||||||| Sbjct 377462 TCGATATGATTGAGATACACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTT 377403 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | || || || || ||||| || || || ||| ||| || || ||||||||||| Sbjct 377402 AGTCCTGTGATGTGGGCTATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGA 377343 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 || || | || |||||||| || || || || ||||| || || ||||| || | Sbjct 377342 ACGCCGAGGCCAATGTCTCCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAA 377283 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 ||||| || || | ||||||||| || || |||||||| || | || ||| Sbjct 377282 ACGTAAAACTGCACAAAGGTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGG 377223 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||||||||| | || | ||||| ||||||| ||||| ||| | ||||| ||| || Sbjct 377222 TTCCACGCGGATATGATTATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACC 377163 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907 | ||||||||| | || ||||||| ||||| | | | || ||| ||||| Sbjct 377162 TGGGCTAGCTGGTCCACACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCT 377103 Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG- 6966 |||||||| ||||| ||||| || |||| ||||||| ||| ||||||| | |||| Sbjct 377102 CCAAAGTGCCTCCATTGGAAGCCATAGATGGGGCCCAGGTCTCCCTCCT--CATAATGGT 377045 Query 6967 -GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 | || ||| |||||| || ||||| || |||| || ||||| || | |||| Sbjct 377044 TCAGACCACGCCTGTCCAAGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTT 376985 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 | || || ||||||| |||||| | |||| |||||||| || ||||| ||||| | Sbjct 376984 TGTCAGAAAGTTCCTTGGCGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAA 376925 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATC 7145 | || ||||| ||||||| || || || |||| ||||| | || | || | || | Sbjct 376924 CCCCTCTCCAGAACACACGCTTTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGC 376865 Query 7146 GGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197 | ||| | || || || || | |||||| || || || ||||| | ||| Sbjct 376864 GACACTGGGCACCAAAAACAGACAAGGTCCCTGTTCCTGTACGGTCTCTCTT 376813 >seq1224 Length=3633418 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| ||||||| ||||| ||||||| |||| ||| || | |||||||| ||||| Sbjct 3004298 TTTCCCTTGCTGACCACGAAGCGTGTGTTTTGGAGGGGGGTAGCTGAGGAGCTCTTGTGG 3004357 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || || ||||| | || || || || || || | ||| | ||||||||| Sbjct 3004358 TTTGTCAGGGGCTCTACAAATGGCACAGAACTTTCTGACAAAAACGTGCACATCTGGGAC 3004417 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGGAGGGCG 34397 || | || || || ||||| ||||||||||| || | ||| || | ||||||| | Sbjct 3004418 GCCAATGGCTCACGTGACTTCCTGGACAAGCGTGGACTGAGCCA-CTATG-AGGAGGGAG 3004475 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || | ||||| || ||||| ||||||||||| |||||||| || || || Sbjct 3004476 ACCTCGGCCCTGTGTACGGCTTCCAGTGGAGGCACTTTGGTGCAGAATA 3004524 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| ||||| || ||||| | ||| ||||||| | Sbjct 3004524 TATTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCCTCCT-C 3004466 Query 6959 CGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 || ||| | || ||||||||||| ||||| || || || | ||||||||||| | Sbjct 3004465 ATAG-TGGCTCAGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCAGATGT 3004407 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 ||| | || || || || || || | ||||| || ||||||| |||| Sbjct 3004406 GCACGTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAAGAGCT 3004347 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||| | || ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 3004346 CCTCAGCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAA 3004298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249467629760