Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1531 145 6e-30 >seq1531 Length=8964412 Score = 145 bits (160), Expect = 6e-30 Identities = 424/642 (66%), Gaps = 26/642 (4%) Strand=Plus/Minus Query 118474 TCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTA 118533 || || ||||| | ||| ||||| || || || | || |||| || || ||||| | Sbjct 377462 TCGATATGATTGAGATACACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTT 377403 Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| || ||||| || |||| | |||||||||||| | || || ||| Sbjct 377402 AGTCCTGTGATGTGGGCTATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGA 377343 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || || |||||| | || | |||||||| || || |||||||| |||| | Sbjct 377342 ACGCCGAGGCCAATGTCTCCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAA 377283 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT----GGAAC-TCAGTTGGG 118708 || |||||||| | | |||| || |||||||| |||| || || || | |||| Sbjct 377282 ACGTAAAACTGCACAAAGGTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGG 377223 Query 118709 CAGGATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAA 118768 ||||| || | || | ||| ||| || || || || || | | Sbjct 377222 -----TTCCACGCGGATATGATTATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGA 377168 Query 118769 TTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAG-ACTCGCATCCTTTATAT 118827 | | | | ||| |||||||| | ||| || || | || | |||| |||||| Sbjct 377167 TGACCTGGGCTAGCTGGTCCACACCTTGTCCCGTGTAGTCAGTGTTTTTATCC-TTATAT 377109 Query 118828 TCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGACCT- 118886 || || ||||| |||||||| || ||||| | || ||||| ||||||| ||| Sbjct 377108 TCCGCTCCAAAGTGCCTCCATTGGAAGCCATAGATGGGGCCCAGGTCTCCCT----CCTC 377053 Query 118887 AAAAT--CTAAACCTACTTTTCTCTGA-AATTCTTTTGACCCATTAGCATTCCAAATA-G 118942 | ||| | | | || | || | |||||| || || || |||| ||| ||| | Sbjct 377052 ATAATGGTTCAGACCACGCCTGTCCAAGAATTCTCGCGAACCGTTCGCATCCCATATATG 376993 Query 118943 CAACTCCttttttt--GCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAG 119000 || ||||||| | | || || || | ||| ||||| || | | ||||| || || Sbjct 376992 CA---CCTTTTTGTCAGAAAGTTCCTTGGCGTTCGTAGAGCCCCGAACGAACCAGAGGAG 376936 Query 119001 CTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGACCTCT 119060 ||| || ||||| |||||||| || || ||||| || | || |||||||| ||||| Sbjct 376935 CTCTTCGACAACCCCTCTCCAGAACACACGCTTTGTGGTGAGCAAGGGAAACTGCCCTCT 376876 Query 119061 AAGTGAATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCC 119102 || ||| | || | ||||||| ||||| ||||| Sbjct 376875 GAGACTATAGCGACACTGGGCACCAAAAACAGACAAGGTCCC 376834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414465141285712