Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1456 82.4 5e-11 seq1001 82.4 5e-11 >seq1456 Length=293654 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978 || || ||||| ||||| ||||| || | |||| | ||||||| ||||||||||| || Sbjct 120461 ATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 120520 Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| | || ||||| ||||| ||||||| || Sbjct 120521 GAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 120558 >seq1001 Length=3733086 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || |||||||| || || |||| || | |||| | ||||||| Sbjct 1254295 GACCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGAC 1254354 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||||||| | || ||||| ||||| ||||||| || Sbjct 1254355 TACAACATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 1254407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852390035516