Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1001 102 7e-17 seq1456 91.5 1e-13 >seq1001 Length=3733086 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || |||||||| || || || || || |||| || || || | || || Sbjct 1254390 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 1254331 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| ||||||||||||||||| | ||| | || ||| ||||| Sbjct 1254330 CAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 1254271 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | || ||| | ||| || || | ||||| | || Sbjct 1254270 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTT 1254211 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || ||||| || || || ||||| ||||| ||| Sbjct 1254210 GCCAGTCAGGGTCTTCACGAAGATCTGCATATTT 1254177 >seq1456 Length=293654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||| | | || | ||| || || || |||||||| || || || Sbjct 119431 AAATATCTGCATGCCTCCACGCAGACGGAGCAC-AAGTGGAGAGTGCTCTCCTTCTGGAT 119373 Query 39105 ATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCT 39163 || || |||| |||| || || | || || ||||| ||||| ||||| || ||||||| Sbjct 119372 GTTGTAGTCGGACAAG-GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCT 119314 Query 39164 GCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTAT 39223 ||||||| | ||| | || ||| ||||| ||| || |||| || | | || | Sbjct 119313 GCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGT 119254 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || | ||| || || | ||||| | || || || || ||||| || ||||| |||| Sbjct 119253 CGGATGGCTCGACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCA 119194 Query 39284 T 39284 | Sbjct 119193 T 119193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || || | || || || | || || ||||| Sbjct 120307 ATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTG 120248 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||| | ||| | || ||| ||||| ||| || Sbjct 120247 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 120188 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || || || |||||| || | ||||| | || || || Sbjct 120187 GGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTCTTCCCTGT 120128 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| Sbjct 120127 CAGGGTCTTCACAAAGATCTGCAT 120104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || |||||||| || || || || || || | || || || | || || Sbjct 119628 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119569 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| |||||| | || ||| ||||| Sbjct 119568 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG-ATGCCCTCCTTGTCTTG 119510 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | | | | ||||| || |||||| || | ||||| | || Sbjct 119509 GATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTT 119450 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || ||||| || ||||| Sbjct 119449 GCCTGTGAGGGTCTTCACAAATATCTGCAT 119420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || | || || ||||| Sbjct 119167 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 119108 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || ||||||||||||||||| | ||| | || ||| ||||| ||| || Sbjct 119107 TTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 119048 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| || | | || ||| | ||| || || | ||||| | || || ||| Sbjct 119047 GCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 118988 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||| ||||| Sbjct 118987 AGGGTTTTCACAAAGATCTGCAT 118965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533517419204