Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1456 107 1e-18 seq317 100 2e-16 seq1001 86.0 4e-12 >seq1456 Length=293654 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| || || || |||||||| |||||||| | | Sbjct 119876 ATGCAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTCA 119935 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| || Sbjct 119936 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119995 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || |||||||| | ||||| | || |||||| Sbjct 119996 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 120055 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 120056 ATCCAGAAAGAGTCCAC 120072 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || ||||| || | | Sbjct 119193 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCC 119252 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||| || || | || ||||| || Sbjct 119253 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 119312 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | ||||| || ||| |||||| Sbjct 119313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCCGACTACAAC 119372 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 119373 ATCCAGAAGGAG 119384 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||| ||||| | | Sbjct 120332 ATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCA 120391 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| ||| Sbjct 120392 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 120451 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||||||||| ||||||| | ||||| | ||| |||||| Sbjct 120452 CAGCGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 120511 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 120512 ATCCAGAAGGAG 120523 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || | | Sbjct 120104 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTCGAGGTGGAGCCGTCA 120163 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 120164 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 120223 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||||||| | ||||| | || |||||| Sbjct 120224 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 120283 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 120284 ATCCAGAAAGAGTCCAC 120300 >seq317 Length=4125 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || |||||||| | | Sbjct 1001 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCATCT 1060 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| ||| Sbjct 1061 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAA 1120 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || ||||| | ||||| | ||| |||||| Sbjct 1121 CAGCGTCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 1180 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| ||| | || || ||| Sbjct 1181 ATCCAGAAGGAGTCAACACTCCACTTGGTT 1210 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || ||||| || ||||| || | | Sbjct 1457 ATGCAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGTGGAGCCATCT 1516 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| ||| Sbjct 1517 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAA 1576 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||||| | ||||| | ||| |||||| Sbjct 1577 CAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1636 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1637 ATCCAGAAGGAGTCAAC 1653 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || ||||| || | | Sbjct 1229 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTCGAGCCATCA 1288 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | |||||||| ||| Sbjct 1289 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 1348 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || ||||| | ||||| | ||| |||||| Sbjct 1349 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 1408 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 1409 ATCCAGAAGGAG 1420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||| || || || || | Sbjct 542 AATATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCA 601 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| || || | |||||||| Sbjct 602 TCCGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCGCCAGA 660 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||| || || || |||||||| | ||||| | || || Sbjct 661 CCAGCAGCGTCTCATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 720 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 721 CAACATCCAGAAAGAGTCCAC 741 >seq1001 Length=3733086 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| || || || || ||||| || || ||||| | Sbjct 1254178 AATATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCA 1254237 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || ||||| Sbjct 1254238 TCCGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGAC 1254297 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||||||||| || |||||||| | ||||| | ||| ||| Sbjct 1254298 CAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 1254357 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 1254358 AACATCCAGAAGGAG 1254372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000092212464