Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1531 255 5e-63 seq1224 132 4e-26 >seq1531 Length=8964412 Score = 255 bits (282), Expect = 5e-63 Identities = 442/648 (68%), Gaps = 2/648 (0%) Strand=Plus/Minus Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 || || || || || |||||||||||||| ||||| || || || | ||| || |||| | Sbjct 377450 AGATACACATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATG 377391 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || || ||||| || || |||||| ||||||||||||||| || || || ||||| || Sbjct 377390 TGGGCTATCATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCA 377331 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG- 29844 ||||| || || | |||||| ||||| ||||||||||| ||||| | ||||||||||| Sbjct 377330 ATGTCTCCGGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGC 377271 Query 29845 ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACA 29904 ||| | || ||||| ||||| || ||||| || |||| |||||||| || | Sbjct 377270 ACA-AAGGTGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGA 377212 Query 29905 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 29964 | ||| || | |||||| | |||| ||| ||||| || | | | | ||||| Sbjct 377211 TATGATTATCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTG 377152 Query 29965 ATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCT 30024 ||||| || |||| |||||| | | || ||||| Sbjct 377151 GTCCACACCTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCT 377092 Query 30025 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30084 ||| ||||| || || | || |||||||||||||| || || | | || | | | Sbjct 377091 CCATTGGAAGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCT 377032 Query 30085 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30144 |||||| || |||| |||||||| || ||||| || | ||| || || || || || Sbjct 377031 GTCCAAGAATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTC 376972 Query 30145 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30204 |||| ||| || || || | |||||||| || ||||| || || || | |||| || Sbjct 376971 CTTGGCGTTCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAA 376912 Query 30205 GACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCC 30264 || | ||| || ||||| | ||||||||| || |||| | || | ||| | || Sbjct 376911 CACACGCTTTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACC 376852 Query 30265 AAACATGGACAAGACTCCCGTGCCTGTCCTGTCTCCCCTGCGTTTGCC 30312 ||| | |||||| || || ||||| | ||||| | | | ||| || Sbjct 376851 AAAAACAGACAAGGTCCCTGTTCCTGTACGGTCTCTCTTTCTTTTTCC 376804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 49882 AGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAAAGTTAAACAGT 49941 ||||||||||||| ||| || | | || || | ||| ||||||||| |||| Sbjct 381511 AGCTGGGCTATCCGGTCCCCTTTGTTCACTTTGAACTCTTCATTCCCAAAGTTGAACATG 381570 Query 49942 ATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAC 50001 ||||| | | |||||| | | | || ||| | |||||||| ||||| ||||| || Sbjct 381571 ATGACACTCACGTTGCCACGGGAATCCCTGTCAATTACCCCGGCTCCGACATCTATGAAT 381630 Query 50002 TTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAG 50043 ||||| | ||||||||||| | || ||||| ||||| ||| Sbjct 381631 TTTTTGTGTGCCAGGCCGGATCGAGGTGCCACTCTGCCATAG 381672 >seq1224 Length=3633418 Score = 132 bits (146), Expect = 4e-26 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG-CTCGAA 30075 || |||||||||||||| |||||||| || || ||||||||||| || ||| ||| | Sbjct 3004512 AAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCCTCCTCATAGTGGCTC-AG 3004454 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 || | |||||||| ||||| | || || |||||||||||||| | || || || Sbjct 3004453 TCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCAGATGTGCACGTTTTTGTC 3004394 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 || || ||| || ||||| || || ||||| ||||||| |||||||| | || | Sbjct 3004393 AGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAAGAGCTCCTCAGCTACCCC 3004334 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30237 | ||||||| || | ||| || || || | ||||||||| || Sbjct 3004333 CCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTGCCC 3004292 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| | |||||||| |||||||||||||||||||||||||| ||||| Sbjct 3005369 AGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGT 3005310 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| ||| |||| || || | |||||| ||||| ||||| || ||||||| | Sbjct 3005309 ACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACAT 3005250 Query 29834 ACGTAAAACT-GACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || |||| |||| | ||| ||||| || || | ||||| Sbjct 3005249 ACATAGAACTGGACA-AAGGCGTGGCAGGGTGGCAACGCCAT 3005209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406151775136888