Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1531 271 7e-68 seq1787 105 6e-18 seq1648 87.8 2e-12 >seq1531 Length=8964412 Score = 271 bits (300), Expect = 7e-68 Identities = 580/860 (67%), Gaps = 10/860 (1%) Strand=Plus/Minus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| || ||||| || | ||||| || | || || || ||||| || ||||| || || Sbjct 403512 CTTCTCAAAGAAGTTGCTCTTGCCCTCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTT 403453 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | ||||||| || ||| | | || | | ||||| || |||||||| || Sbjct 403452 TTCAGTGTTGTAAATCTTGCTGCACATCAAGTCTCCCAACAATCTATCTGCTACAAACTC 403393 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456 |||||||| |||| || || || || ||||| | |||| || || |||| ||| Sbjct 403392 AATATACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGT 403333 Query 4457 CAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG-ATTATATCTTTTATTTTATCTTTAG 4515 |||||||||||| || || | ||||| |||| || || | | || | | | Sbjct 403332 CAAAAACTCTTGCTCAATCTTGACGGCA-CTGTCTATAATCTGGTGAATATCTGCCTCGC 403274 Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 ||| | || || | || | ||||| | ||| ||||| ||| |||| || || | Sbjct 403273 TTGGCCTGTTAACCAGGTGGCTAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCAT 403214 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 ||||||| ||||| ||||| || || || | || ||||| || |||||||| || | || Sbjct 403213 CTCTGCTGATCAGCTCGTTGGAGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACC 403154 Query 4636 AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA 4695 | |||||||| ||||| |||||||| || || || ||||| || || || || || || | Sbjct 403153 AGAATATAGCTGCAAAGGACCCAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCA 403094 Query 4696 ATCGGGACCCGAACGAG-CTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTT 4754 || ||| || | | || || |||| |||||| | | ||||| | ||| || Sbjct 403093 CACGTTCCCCAAAAGTGGCTCGCAG-GTCTCCAATCCACCTGAGGGCCCACTCAGCCTTC 403035 Query 4755 TTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCT 4814 ||||| || || || | || | || || ||||| | | |||| ||| || || Sbjct 403034 TTCTTTACACAAGGTGTGGTCTCGATTGCATTAAACAGATGCTTTTTCTCATGCGGATCC 402975 Query 4815 TGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATC 4874 | ||| || ||||| || | || || |||||||||||||| || || || || |||||| Sbjct 402974 TCAATGTAGGTGTCGATCAAGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATC 402915 Query 4875 TGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACT 4934 || || || || ||||| || || || || | ||| || || || | ||||| ||||| Sbjct 402914 TGGAAGCCATAGAAGCACCTGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACC 402855 Query 4935 AAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAG 4994 | || || | || ||||| ||||| |||||||| || ||||||| | || ||| Sbjct 402854 AGATTCTCACTGACGATACCATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAG 402795 Query 4995 TACTGTTC---GTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051 | | ||| ||||| | || | |||| ||| ||| || ||| || || ||| Sbjct 402794 TGTTTTTCGTTGTCAG---TGAGACTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACT 402738 Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATAC 5111 || || ||||| || ||||| | || || |||||||| |||| || || | | | Sbjct 402737 TCCTCCGTTGTCCAGAATGACGCCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTC 402678 Query 5112 TGAATCGGAAGTATGACAAA 5131 || || |||| ||||| || Sbjct 402677 TGTATAGGAAAGATGACGAA 402658 >seq1787 Length=2284422 Score = 105 bits (116), Expect = 6e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || ||||| | Sbjct 1959420 CAGGCAAAGTCACAGTGCAGACCCTCGTCTCTGCTGATCAGCTCGTTGGAGAACGTCAGC 1959479 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 || ||||| | ||||||||| || ||||| || ||||| ||||| || || |||| || Sbjct 1959480 CCAGGCATCAGACCTCTCTTCTTCAGCCAGAAAATAGCAGCAAAGGAACCTGAAATGA 1959537 >seq1648 Length=77580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 4530 AAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGT 4589 |||| | |||||| | || || || ||||| ||||| || ||||| | ||||| ||| Sbjct 8292 AAGTGTTTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGT 8351 Query 4590 TCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCA 4649 || || || || || | || ||||| | || | || || ||||| || || || ||| Sbjct 8352 TCATTTGAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCA 8411 Query 4650 AATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAAC 4709 |||||||| || ||||| | || || ||||| || || || || | || ||||| Sbjct 8412 AATGACCCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGCGACCAGCCGCTCCCCGA-- 8469 Query 4710 GAGCTGGCTTTGTCTTTA 4727 |||||| |||||||| Sbjct 8470 -AGCTGG---TGTCTTTA 8483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037587628564