Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1531 327 8e-85 seq1224 145 6e-30 >seq1531 Length=8964412 Score = 327 bits (362), Expect = 8e-85 Identities = 530/760 (70%), Gaps = 2/760 (0%) Strand=Plus/Minus Query 27048 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 27107 ||||||||| | | ||||| || | | | ||||| | | || || | || |||| Sbjct 377562 GAAATCCTCGAACCTGAAGTCATCAATGTTTTCCACTTTGCGTTTGATGTTGAGGATGGG 377503 Query 27108 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 27167 ||| |||| || | |||| | ||| || || | || | |||| || || || Sbjct 377502 AAAAGGTCGTGGATTTCTCTTTACCTGCTCGTTAAGAGCGTCGATATGATTGAGATACAC 377443 Query 27168 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 27227 || ||||||||||||||||| ||||| || || || | ||| || |||| ||| || || Sbjct 377442 ATGCGCGTCTCCCAGGGTGTGTACAAAGTCCCCAGGCTTTAGTCCTGTGATGTGGGCTAT 377383 Query 27228 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 27287 ||| || || |||||| ||||||||||||||| || || || ||||| || ||||| || Sbjct 377382 CATATAGGTCAGGAGACTGTAGCTGGCGATGTTGAACGGAACGCCGAGGCCAATGTCTCC 377323 Query 27288 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTG-ACATATGG 27346 || | |||||| ||||||||||||||||| || || | ||||||||||| ||| | || Sbjct 377322 GGAGCGCTGGTACAGCTGACACGAGAGCTCGCCGTCACAAACGTAAAACTGCACA-AAGG 377264 Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 |||||| ||||| || ||||| | || |||| |||||||| ||| | | ||| | Sbjct 377263 TGTGGCAGGGAGGCAGCGCCATATTGGGCACGTCTGGTGGGTTCCACGCGGATATGATTA 377204 Query 27407 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 27466 | | |||||| | |||| ||| ||||| || | | | | ||||| ||||| | Sbjct 377203 TCCTCCTGTCATGAGGGTCATTCTTGATGGTGTGGATGACCTGGGCTAGCTGGTCCACAC 377144 Query 27467 CCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGA 27526 | |||| |||||| | | ||| | || || ||||| || ||||||||||||| Sbjct 377143 CTTGTCCCGTGTAGTCAGTGTTTTTATCCTTATATTCCGCTCCAAAGTGCCTCCATTGGA 377084 Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 | || || | || |||||||||||||| || || | | || | | ||||||| | Sbjct 377083 AGCCATAGATGGGGCCCAGGTCTCCCTCCTCATAATGGTTCAGACCACGCCTGTCCAAGA 377024 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 27646 | |||| |||||||| || ||||| || | ||| || || || || || |||| || Sbjct 377023 ATTCTCGCGAACCGTTCGCATCCCATATATGCACCTTTTTGTCAGAAAGTTCCTTGGCGT 376964 Query 27647 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 27706 | || || || | |||||||| || ||||| || || || | |||| || || | || Sbjct 376963 TCGTAGAGCCCCGAACGAACCAGAGGAGCTCTTCGACAACCCCTCTCCAGAACACACGCT 376904 Query 27707 TGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGG 27766 | || ||||| | ||||||||| || |||| | || | ||| | |||||| || | Sbjct 376903 TTGTGGTGAGCAAGGGAAACTGCCCTCTGAGACTATAGCGACACTGGGCACCAAAAACAG 376844 Query 27767 ACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACC 27806 ||||| || || || || | ||||| | | | ||| || Sbjct 376843 ACAAGGTCCCTGTTCCTGTACGGTCTCTCTTTCTTTTTCC 376804 >seq1224 Length=3633418 Score = 145 bits (160), Expect = 6e-30 Identities = 131/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| | |||||||| |||||||||||||||||||||||||| |||||| Sbjct 3005369 AGTCCTGTGATGTGGGTGATCATGTAGGTGAGGAGAGAGTAGCTGGCGATGTTGAAGGGT 3005310 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || ||||| ||| |||| ||||| | |||||| ||||||||||| || ||||| | | | Sbjct 3005309 ACGCCGAGTCCCGTGTCTCCCGAGCGCTGGTACAGCTGACACGACAGTTCTCCGTTACAT 3005250 Query 27328 ACGTAAAACT-GACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || |||| |||| | ||||||||| || || | ||||| Sbjct 3005249 ACATAGAACTGGACA-AAGGCGTGGCAGGGTGGCAACGCCAT 3005209 Score = 141 bits (156), Expect = 7e-29 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 27493 TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCC 27552 ||| |||| ||||| || || |||||||| ||||| |||||||| || || ||||||||| Sbjct 3004530 TCCTTGTATTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGGCCGAGGTCTCCC 3004471 Query 27553 TCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 || || ||| ||| | || | |||||||| ||||| | || || ||||||||||| Sbjct 3004470 TCCTCATAGTGGCTC-AGTCCACGCTTGTCCAGGAAGTCACGTGAGCCATTGGCGTCCCA 3004412 Query 27612 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 27671 ||| | || || || || || ||| || ||||| || || ||||| ||||||| Sbjct 3004411 GATGTGCACGTTTTTGTCAGAAAGTTCTGTGCCATTTGTAGAGCCCCTGACAAACCACAA 3004352 Query 27672 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 27731 |||||||| | || || ||||||| || | ||| || || || | ||||||||| || Sbjct 3004351 GAGCTCCTCAGCTACCCCCCTCCAAAACACACGCTTCGTGGTCAGCAAGGGAAACTGCCC 3004292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369496806224348