Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1531 304 2e-77 seq1648 141 1e-28 seq1787 86.0 9e-12 >seq1531 Length=8964412 Score = 304 bits (336), Expect = 2e-77 Identities = 584/855 (68%), Gaps = 11/855 (1%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| || ||||| || || || || ||||| ||||| || || || | ||||| Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt--AA 47952 |||| || || || ||||| || ||||| || || | | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 47953 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCAC 48012 ||| || ||| | || ||||||||| || || || ||||| |||||||| || Sbjct 403427 ATC--AAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTT 403370 Query 48013 AATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGA 48072 |||||| || || || || || || || || || || | ||||||||| || || ||| Sbjct 403369 GATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGA 403310 Query 48073 CAGCATCCACTATTATC-GATGT-TACCGTTTCCTCACTTGGTGGATACAACAAATGTTT 48130 | ||| |||| ||| | || || | | |||| ||||| | | || || | Sbjct 403309 CGGCACTGTCTATAATCTGGTGAATATC--TGCCTCGCTTGGCCTGTTAACCAGGTGGCT 403252 Query 48131 AAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGA 48190 |||||| | ||| ||||| ||| || | || |||||||| || || | ||||| || Sbjct 403251 AAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGA 403192 Query 48191 AAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCC 48250 || || || || ||||| | ||| | || || | ||| ||||| || || || || || Sbjct 403191 GAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCC 403132 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC 48310 ||| || || || ||||| || || || || || | | || || || ||||| Sbjct 403131 AGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCG 403072 Query 48311 GTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 || | ||||||| | ||||| ||||||||||||||||||||||| | || || Sbjct 403071 CAGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTC 403012 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 || |||||||| ||| ||||| |||| ||| | || ||| || || || || || Sbjct 403011 GATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAG 402952 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 ||| |||||||| || || || || ||||| || ||||| || || || || || || || Sbjct 402951 ACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGC 402892 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 || || | || ||||| | | |||| || ||| ||||||| | || || ||||| Sbjct 402891 CTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATC 402832 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 |||||| ||||| ||||| || | | || || || | |||||||||| ||| || | Sbjct 402831 ACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACT 402772 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 |||| | | | || || ||| |||||||| || | |||||| ||||| ||| | Sbjct 402771 CCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCAC 402712 Query 48668 TGCTTTTTTATACAT 48682 || || || ||||| Sbjct 402711 GGCCTTCTTGTACAT 402697 >seq1648 Length=77580 Score = 141 bits (156), Expect = 1e-28 Identities = 331/499 (66%), Gaps = 3/499 (1%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| || || ||| |||| | ||||| ||||| || | || || | | || ||||| Sbjct 8018 TTTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATT 8077 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||||||| ||||| || || | | ||||| || | | | | |||| | Sbjct 8078 TTCCATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAG 8137 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 ||| | ||||| || || || || || ||||||||| | | ||||| || || | Sbjct 8138 CAGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCAT 8197 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || | | ||||||||||| ||||| || |||||| |||| || | | || Sbjct 8198 GTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGAT 8257 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | ||| || | ||| || || || | | ||| |||||||||| | || || || Sbjct 8258 CTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTTAAACAACAGGCAGGCGAA 8317 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 ||||| || | || || || | |||||||| ||| || || || || || || ||||| Sbjct 8318 CTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGCAT 8377 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || || ||||| || ||||| || || || || || || || || ||||| | || || Sbjct 8378 CAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCCTC 8437 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGTATCCACCG 48325 ||||| || || ||| || | ||| ||| | |||| ||| || |||||| | Sbjct 8438 CACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCACTG 8497 Query 48326 TTGTGCCCAATCAGCCTTC 48344 | ||||| || |||||| Sbjct 8498 CAGCGCCCAGTCCGCCTTC 8516 >seq1787 Length=2284422 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT 48308 || || ||||| || || ||||| || || || || | | ||| ||| || ||||| Sbjct 1959821 CCTGAGAAGAAGATTCCCTCTACAGCAGCGAAGGCAACCACACGCTCCCCGAAAGTGGCT 1959880 Query 48309 TCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 || |||| ||||||| ||||||| |||||||||||||| ||||| |||| || Sbjct 1959881 TCCTTGTCCCCGATCCACCTGAGTGCCCAGTCAGCCTTCTTCTTCACACAGGGCAGGGTC 1959940 Query 48366 TCTATAGCATTAAAGAGA 48383 ||||| ||||| |||||| Sbjct 1959941 TCTATGGCATTGAAGAGA 1959958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694648758805120