Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1531 345 6e-90 seq1648 176 6e-39 >seq1531 Length=8964412 Score = 345 bits (382), Expect = 6e-90 Identities = 621/899 (69%), Gaps = 9/899 (1%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| || ||||| || ||||| || || || ||||| || || || | ||||| Sbjct 403547 GACATCACCCCCATCTTCTGGTACTCTCCCACCTTCTTCTCAAAGAAGTTGCTCTTGCCC 403488 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAttttttt--AA 46441 |||| || || || ||||| || ||||| || || | || ||||| || | | Sbjct 403487 TCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCAC 403428 Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCAC 46501 ||| || ||| | || ||||||||| || || || |||||| |||||||| || Sbjct 403427 ATC--AAGTCTCCCAACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTT 403370 Query 46502 AATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561 |||||| || || || || || || || || || || | ||||||||| ||||| ||| Sbjct 403369 GATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGA 403310 Query 46562 CAGCATCCGATATTATCGATGTTACTGTTT-CCTCACTTGGTGGATGCATCAAATGTTTA 46620 | ||| ||| ||| || | | | | |||| ||||| | | || || || Sbjct 403309 CGGCACTGTCTATAATCTG-GTGAATATCTGCCTCGCTTGGCCTGTTAACCAGGTGGCTA 403251 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 ||||| | ||| ||||| ||| || | || |||||||| || || | ||||| || Sbjct 403250 AACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGGAG 403191 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || ||||| ||||| | ||| | ||| || | ||| |||||||| || || || ||| Sbjct 403190 AAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACCCA 403131 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT-C 46799 || || || || ||||| ||||| ||||| || || | | || || || |||| | Sbjct 403130 GAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTCGC 403071 Query 46800 AT-TATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 | | | ||||||||| | ||||| |||||||| |||||||||||||| | || || Sbjct 403070 AGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCTCG 403011 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || |||||||| ||| ||||| |||| ||| | || || || || || || ||| Sbjct 403010 ATTGCATTAAACAGATGCTTTTTCTCATGCGGATCCTCAATGTAGGTGTCGATCAAGAGA 402951 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || |||||||| ||||| ||||| ||||| || ||||| || || || || || || || Sbjct 402950 CTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCC 402891 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || || | || |||||| | | |||| || || ||||||| | || || |||||| Sbjct 402890 TCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATACCATCA 402831 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 ||||| ||||| |||||||| | | || || || | |||||| | | ||| || | Sbjct 402830 CTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAGTGAGACTC 402771 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 |||| | | | || || ||| |||||||| || | |||||||||||||||| | Sbjct 402770 CTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATGACGCCACG 402711 Query 47158 GCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATT 47216 || || || ||||| ||| || || | | || || ||||| || || || | ||| Sbjct 402710 GCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGAAGCGATT 402652 >seq1648 Length=77580 Score = 176 bits (194), Expect = 6e-39 Identities = 339/498 (68%), Gaps = 3/498 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| ||||| ||| | || | ||||| ||||| || | || || | | || ||||| Sbjct 8018 TTTCTGGTACTCAGCCACCCTCTTCTCAAAAAAGTTTGCCTTCCCCTGGAGGGAGATATT 8077 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||||||| |||||||| || || ||||| || | | | | |||| | Sbjct 8078 TTCCATAAAGTCAAACGGGTTTTCCACGGAATAAACCTTCGGACAGCTGAGCTCTGCCAG 8137 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 ||| | ||||| || || || || || |||||||||| | | ||||| || || | Sbjct 8138 CAGCCGGTCTGCTACAAACTCAATGTAGGTTTTCATCAGCTGTGAGTTCATCCCGATCAT 8197 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | |||| | ||||||||||| ||||| || || ||| |||| || | | | || Sbjct 8198 GTCCACCGACATGGCCTCCGTAAGGAACTCCTGCTCGATACTGACGGCCTGGGTGACGAT 8257 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | ||| ||| | ||| || || || || ||||| |||||||||| | || || || Sbjct 8258 CTGTGTCACTCTGTCCGGGCTGGGCGGGTGGATCAAGTGTTTAAACAACAGGCAGGCGAA 8317 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 ||||| || | ||| || || | |||||||| ||| || || || || || || ||||| Sbjct 8318 CTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTTGAGAAGGTCAGGCCTGGCAT 8377 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || || || || || ||||| || || || || || || || || ||||| | || || Sbjct 8378 CAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGACCCTGAGAAGAAGACTCCCTC 8437 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA-TG--AATCCACCT 46814 || || ||||| ||||| || | ||| ||| | |||| || ||| || |||||| Sbjct 8438 CACGGCAGCGAAGGCGACCAGCCGCTCCCCGAAGCTGGTGTCTTTACTGGCGATCCACTG 8497 Query 46815 TTGAGCCCAATCAGCCTT 46832 | ||||| || ||||| Sbjct 8498 CAGCGCCCAGTCCGCCTT 8515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712913831842560