Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq317 145 2e-29 seq1456 134 3e-26 seq1446 125 2e-23 seq1001 118 2e-21 >seq317 Length=4125 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||||||||| || |||||||| ||||||||||| || | | || | |||||| Sbjct 756 AGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 697 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 696 TCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCT 637 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| || ||| || ||||| || || || Sbjct 636 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTC 577 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||| || Sbjct 576 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATATT 542 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || |||||||| ||||||||||| |||| | || | |||||| Sbjct 984 AGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 925 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 924 TCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCT 865 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| || ||| ||||| || || || || Sbjct 864 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTC 805 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||||| |||||| Sbjct 804 TTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 773 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | |||||||| || || ||||| || Sbjct 1420 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 1361 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||| ||||| | || ||| || ||||| ||||| || || ||||| | Sbjct 1360 GATGAGACGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 1301 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | | ||||||| ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 1300 CTCGATGGTGTCTGATGGCTCGACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 1241 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 1240 GAAGATCTGCAT 1229 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | |||||||||| Sbjct 1207 CAAG-TGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTA 1149 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | ||| ||||| | | ||| || ||||| ||||| | Sbjct 1148 GCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 1089 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | |||| || ||| ||||| || || || || |||| Sbjct 1088 TCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTTGC 1029 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 1028 CTGTCAGGGTCTTCACGAAGATCTGCAT 1001 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || ||||| || ||||||||||| |||| | || | |||||| Sbjct 1668 AGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 1609 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| ||||| || | ||| ||||| | | ||| || ||||| ||| Sbjct 1608 TCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 1549 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| || ||| ||||| || || || || Sbjct 1548 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCACTTCCAGGGTGATGGTC 1489 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || ||||||| |||||| Sbjct 1488 TTGCCTGTCAGGGTTTTAACGAAGATCTGCAT 1457 >seq1456 Length=293654 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 119859 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 119800 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | | ||| || ||||| ||| Sbjct 119799 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 119740 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| || ||| |||||||| || || || Sbjct 119739 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACTTCAAGGGTGATGGTC 119680 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| |||||| Sbjct 119679 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 119648 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || |||||||| ||||||||||| || | | || | |||||| Sbjct 120087 AGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 120028 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | | ||| || ||||| ||| Sbjct 120027 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 119968 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | ||||||| ||| ||||||||||| || || Sbjct 119967 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACTTCAAGAGTGATGGTC 119908 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || || ||||| | |||||| Sbjct 119907 TTGCCTGTGAGGGTTTTGACGAAAATCTGCAT 119876 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||||||||| || |||||||| ||||||||||| || | | || | |||||| Sbjct 120315 AGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 120256 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | ||| || ||||| ||| Sbjct 120255 TCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 120196 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | ||||||| ||| || || || || || || Sbjct 120195 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGACGGCTCCACCTCGAGGGTGATGGTC 120136 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| |||| |||||| Sbjct 120135 TTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 120104 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 119176 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 119117 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | | ||| || ||||| ||| Sbjct 119116 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 119057 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| || ||| || ||||| || || || Sbjct 119056 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCGACCTCAAGGGTGATGGTC 118997 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| |||| |||||| Sbjct 118996 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 118965 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || ||||| ||| || ||||||||||| |||| || || | ||||| Sbjct 119404 GAGCACAAG-TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATC 119346 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || | ||||||||| | | ||| || ||||| || Sbjct 119345 TTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 119286 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||| |||| | |||| || ||| |||||||| || || || Sbjct 119285 TTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGT 119226 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || || ||||||| |||||| Sbjct 119225 CTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 119193 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | |||||||| | ||| |||||||| Sbjct 120523 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAA 120464 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | ||| ||||| | | ||| || ||||| ||||| || || ||||| | Sbjct 120463 GATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 120404 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | | ||||||| ||| || || || || || || ||||| || || || || || Sbjct 120403 CTCGATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGAC 120344 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 120343 GAAGATCTGCAT 120332 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||| || ||||||||||| || | | || | |||||||| | Sbjct 119626 CAAG-TGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 119568 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | ||||||||| | | ||| || ||||| ||||| | Sbjct 119567 GCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGA 119508 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | | | ||||| ||| ||||| || || || || |||| Sbjct 119507 TCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTGC 119448 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| |||||||| || | |||||| Sbjct 119447 CTGTGAGGGTCTTCACAAATATCTGCAT 119420 >seq1446 Length=3482675 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | |||||||| || || ||||||||||| Sbjct 1542310 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATC 1542251 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | | ||| || ||||| ||||| || || || ||| |||| Sbjct 1542250 AGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCG 1542191 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||||||| ||| || || || || || || |||||||| || |||||||||||| Sbjct 1542190 ATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 1542131 Query 152097 ACCTGCAT-TTTACCCTTACT 152116 | |||||| ||| |||| || Sbjct 1542130 ATCTGCATATTTTTCCTTGCT 1542110 >seq1001 Length=3733086 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| | || | |||||||| || || ||||| || Sbjct 1254372 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1254313 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 |||||| | ||||||||| | | ||| || ||||| ||||| || || ||||| | Sbjct 1254312 GATAAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 1254253 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | | |||| || ||| || ||||| || || || ||||| || || |||||||| Sbjct 1254252 CTCGATGGTGTCGGATGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1254193 Query 152093 GAAGACCTGCATTTT 152107 ||||| |||||| || Sbjct 1254192 GAAGATCTGCATATT 1254178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786680076668