Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1531 179 4e-40 seq1648 98.7 1e-15 >seq1531 Length=8964412 Score = 179 bits (198), Expect = 4e-40 Identities = 587/901 (65%), Gaps = 26/901 (3%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTG-TCTTACCCT 23263 ||| || ||||| || || || || || || | |||| ||| || ||| |||| |||| Sbjct 403545 CATCACCCCCATCTTCTGGTACTCTCCCAC-CTTCTTCTCAAAGAAGTTGCTCTTGCCCT 403487 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACA--GCTTTACA 23321 | | || || || ||||| || ||||| || || ||| || || | ||| ||| Sbjct 403486 CCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTTTCAGTGTTGTAAATCTTGCTGCACA 403427 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | | ||| || | |||||||||||||| |||||||| || ||||| || | Sbjct 403426 TCAAGTCTCCC--AACAATCTATCTGCTACAAACTCAATATACTGTTTCATCAGGTCTTG 403369 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || || || || || |||| || || || || || ||||| || Sbjct 403368 ATTCATCCCAATCAGCTTCACGGGAAGGGCGTCTGTCAAAAACTCTTGCTCAATCTTGAC 403309 Query 23442 AGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT--- 23498 ||| | || || || |||| || | || || || | |||| | | Sbjct 403308 GGCACTGTCTATAATCTGGTGAATATCTGCCTCGCTTGGCC----TGTTAACCAGGTGGC 403253 Query 23499 -AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 ||||| | ||| ||||| ||| || | || ||||| || || |||| || || | Sbjct 403252 TAAACATCAGACAGGCAAACTCAGTGTGCATCCCCTCATCTCTGCTGATCAGCTCGTTGG 403193 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 | || || | |||||||| ||||||| || || | ||| ||||| || ||||| || | Sbjct 403192 AGAAAGTCAGCCCTGGCATCAATCCTCTCTTCTTCAACCAGAATATAGCTGCAAAGGACC 403133 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | || || || || || || ||||| || || || || | |||| ||||| || || Sbjct 403132 CAGAGAAAAAGATCCCTTCCACAGCTGCGAAAGCAACCACACGTTCCCCAAAAGTGGCTC 403073 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 || |||||| | | ||| | ||||||| |||||||| | || | Sbjct 403072 GCAGGTCTCCAATCCACCTGAGGGCCCACTCAGCCTTCTTCTTTACACAAGGTGTGGTCT 403013 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTA 23794 | ||||| || || ||| | ||||||| ||| ||| || || || || || | Sbjct 403012 CGATTGCATTAAACAGAT--GCTTTTTCT-CATGCGGATCCTCAATGTAGGTGTCGATCA 402956 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 | ||| |||||||||||||| || || ||||| |||||||| || ||||| || || | Sbjct 402955 AGAGACTGTACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACC 402896 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 | || || | |||||| || || || | ||||| | | | ||| || | || |||| Sbjct 402895 TGGCCTCGGTCAATTGCACCTCTTTGTAGAATCTCTCTACCAGATTCTCACTGACGATAC 402836 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTG 23971 |||||||||| |||||||| || | || || || || || ||| |||| |||| || Sbjct 402835 CATCACTAGCTGCAAAGAATGCCAAAATGTACTTGATGAAGTGTTTTTCGTTGTCAG-TG 402777 Query 23972 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAAC 24031 | | | |||||| | | || || || || ||||| || |||||| || Sbjct 402776 AGA--CTCCTCCAATGGTCCAAGTCCTTACCTATGTCTACTTCCTCCGTTGTCCAGAATG 402719 Query 24032 TTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGA 24091 |||| ||| ||| ||||| | ||| || || | | ||||| ||||| || |||| Sbjct 402718 ACGCCACGGCCTTCTTGTACATGAACCAGATGTCGTGGTTCTGTATAGGAAAGATGACGA 402659 Query 24092 A 24092 | Sbjct 402658 A 402658 >seq1648 Length=77580 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 |||||||| | || || || ||||| || | ||| || || | |||||| | |||||| Sbjct 8298 TTAAACAACAGGCAGGCGAACTCACAGTGCAAGCCCTCGTCACGACTAATTAGTTCATTT 8357 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 || || || | |||||||| | || ||||| || | ||| || || ||||||||||| Sbjct 8358 GAGAAGGTCAGGCCTGGCATCAGCCCGCGTTTCTTTAGCCAGAAAATGGCAGCAAATGAC 8417 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 || || ||||| | ||||| || || || ||||| || || || Sbjct 8418 CCTGAGAAGAAGACTCCCTCCACGGCAGCGAAGGCGACCAGCCG 8461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521472955071200