Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1001 149 5e-31 seq317 138 8e-28 seq1456 127 1e-24 seq1446 122 6e-23 >seq1001 Length=3733086 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||| ||| || ||||||||||| ||||||||||| |||| Sbjct 1254408 TCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1254349 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || ||||||||||| ||||||||||| | ||||||||| |||| || Sbjct 1254348 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGG 1254289 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| || ||||| ||| | |||| | |||||||||| | || | Sbjct 1254288 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCGGATGGCTCAA 1254230 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| || || ||||||||||||||||| ||||| Sbjct 1254229 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1254181 >seq317 Length=4125 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| ||| || ||||||||||| ||||||||||| || Sbjct 1459 CATGCCACCACGCAGACGCAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC 1400 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| ||||||||||| | |||||| || |||| Sbjct 1399 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGG 1340 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||| | |||| | |||||||| | | | Sbjct 1339 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCTGATGGCT 1281 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 1280 CGACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 1228 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| ||||| || ||| || ||||||||||| || Sbjct 1003 CATGCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCTTTCTGGATGTTGTAGTC 944 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| |||||| || |||||||| | ||||||||| |||| Sbjct 943 GGACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 884 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | || | |||||||| | | || Sbjct 883 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTC 824 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 823 AACTTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 772 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || |||||| ||||| || |||||| ||||||||||| |||| Sbjct 1684 TCCACCACGCAGACGCAGCACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 1625 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || |||| |||||| ||||||||||| | |||||| || |||| || Sbjct 1624 CAGGGTGCGGCCATCTTCCAACTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGTGG 1565 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| || ||||| || | | |||| | |||||||| | | |||| Sbjct 1564 GATGCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCAGATGGCTCCA 1506 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||| || || ||||| || || ||||| || |||||||| |||||| Sbjct 1505 CTTCCAGGGTGATGGTCTTGCCTGTCAGGGTTTTAACGAAGATCTGCATG 1456 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || ||||| ||| ||| || ||||||||||| || Sbjct 775 CATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 716 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||||||||| |||||||| | ||||||||| |||| Sbjct 715 AGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGG 656 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | | | |||||||||| | || Sbjct 655 CGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTC 596 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || ||||||||||| ||||| ||||| Sbjct 595 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 545 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 1209 ACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCT 1150 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||| || |||| || | || ||||| || Sbjct 1149 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1090 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||| | | || || |||| || || ||||| Sbjct 1089 ATCTTGGCCTTGAC-GTTCTCGATGGTGTCAGATGGCTCAACTTCCAGGGTGATGGTCTT 1031 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||||||||| |||||| Sbjct 1030 GCCTGTCAGGGTCTTCACGAAGATCTGCATG 1000 >seq1456 Length=293654 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||||||||||| ||||||||||| || | || ||| | || ||| Sbjct 119628 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 119569 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||| |||| || | || ||||| || Sbjct 119568 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 119509 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| || | ||||| || | | ||||| || | || || ||||| Sbjct 119508 ATCTTGGCCTTCACATTTTCAATGGTATCTGACGGCTCCACTTCTAGGGTGATGGTCTTG 119449 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||| || || |||||| Sbjct 119448 CCTGTGAGGGTCTTCACAAATATCTGCATG 119419 Score = 125 bits (138), Expect = 5e-24 Identities = 157/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 44131 CAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCA 44189 || ||| || ||||||||||| ||||||||||| |||| | || || || | || |||| Sbjct 119399 CAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGC-CATCTTCCA 119341 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||||| ||||||||||| | ||||||||| |||| || | || ||||| || | Sbjct 119340 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 119281 Query 44250 TCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||| || | | |||| | || ||||||| | || || || | || || ||||| Sbjct 119280 TCTT-GGCCTTGACGTTCTCGATAGTGTCGGATGGCTCGACTTCAAGGGTGATGGTCTTG 119222 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||| || |||||||| |||||| Sbjct 119221 CCTGTGAGGGTTTTGACGAAGATCTGCATG 119192 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 119878 CATGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 119819 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||||| | ||||||||| |||| Sbjct 119818 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGG 119759 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | | | |||||||||| | || Sbjct 119758 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTC 119699 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || || ||||| || |||||||||||||| ||||| |||||| Sbjct 119698 GACTTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 119647 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | || ||||| ||| || ||||||||||| ||||||||||| |||| Sbjct 120560 TTCCACCACGCAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 120501 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| | || |||| ||| || ||||| ||||| | |||||| || |||| | Sbjct 120500 ACAGGGTGCGGCCATCTTCCAACTGTTTGCCGGCGAAGATGAGACGCTGTTGGTCTGGTG 120441 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | || ||||| || ||||| || | | |||| | |||||||| | | || Sbjct 120440 GGATGCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCTGATGGCTCA 120382 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||| || |||||||| |||||| Sbjct 120381 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 120331 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 119195 CATGCCACCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 119136 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||||| | ||||||||| |||| Sbjct 119135 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGG 119076 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | | | |||||||||| | || Sbjct 119075 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTC 119016 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| | || || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 119015 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGAT 118962 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || ||||| ||| ||| || ||||||||||| || Sbjct 120334 CATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 120275 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | ||||||||| |||| Sbjct 120274 AGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 120215 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||| | |||| | |||||||| | | | Sbjct 120214 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCAATGGTGTCTGACGGCT 120156 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 120155 CCACCTCGAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 120103 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||| ||||| || ||| ||| || ||||||||||| || Sbjct 120106 CATGCCTCCACGCAGACGCAGCACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 120047 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||||| | ||||||||| |||| Sbjct 120046 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGG 119987 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | |||| | |||||||| | | | Sbjct 119986 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCTGACGGCT 119928 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | || || ||||| || |||||||| || ||||| || |||||| Sbjct 119927 CAACTTCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAAATCTGCATG 119875 >seq1446 Length=3482675 Score = 122 bits (134), Expect = 6e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || ||||||||||| ||||| |||| Sbjct 1542312 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGA 1542253 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| |||| || | || ||||| || ||||| ||||| | Sbjct 1542252 TCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCT 1542193 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||| | | |||||||| | || || ||||| ||||| ||||||||||||| Sbjct 1542192 CGATGGTGTCTGAAGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1542133 Query 44328 AGATTTGCAT 44337 |||| ||||| Sbjct 1542132 AGATCTGCAT 1542123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980273920036