Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20belcheri_20[refseq_20GCF_5F001625305.1_202016-04-21] 2,308 sequences; 426,123,519 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1456 156 1e-32 seq317 147 5e-30 seq1446 145 2e-29 seq1001 141 2e-28 >seq1456 Length=293654 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| |||||||| || || ||||| || || || || |||||| Sbjct 119879 CAGATTTTCGTCAAAACCCTCACAGGCAAGACCATCACTCTTGAAGTTGAGCCGTCAGAC 119938 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 119939 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 119998 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 119999 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 120058 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 120059 CAGAAAGAGTCCACCCTCCACCTTGT 120084 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| || || ||||||||||||||||| |||||| Sbjct 120107 CAGATCTTTGTGAAGACCCTGACAGGGAAGACCATCACCCTCGAGGTGGAGCCGTCAGAC 120166 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 120167 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 120226 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 120227 CGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 120286 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || |||||||| Sbjct 120287 CAGAAAGAGTCCACCCTTCATCTTGT 120312 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || ||||| || || |||||||||||||| || |||||| Sbjct 120335 CAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCAGAC 120394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 120395 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAG 120454 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||| | |||||||| | || || |||| || ||| || Sbjct 120455 CGTCTCATCTTCGCCGGCAAACAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 120514 Query 178104 CAAAAAGA 178111 || || || Sbjct 120515 CAGAAGGA 120522 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || |||||||| ||||| || || ||| Sbjct 118968 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCATCCGAC 119027 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 119028 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 119087 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 119088 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 119147 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 119148 CAGAAGGAGTCCACCCTCCACCTTGT 119173 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| || || |||||||| || || || || ||| Sbjct 119651 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCCGAC 119710 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 119711 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 119770 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 119771 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 119830 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 119831 CAGAAGGAGTCCACCCTCCACCTTGT 119856 Score = 136 bits (150), Expect = 1e-26 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| |||||||| || || |||||||| || || || || ||| Sbjct 119196 CAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAAGTCGAGCCATCCGAC 119255 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 119256 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 119315 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||| ||||| || ||||| |||||||| | || |||| |||| || ||| | Sbjct 119316 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC-CTTGTCCGACTACAACAT 119374 Query 178103 CCAAAAAGA 178111 ||| || || Sbjct 119375 CCAGAAGGA 119383 >seq317 Length=4125 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| || || || || ||| Sbjct 1004 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCATCTGAC 1063 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 1064 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAACAG 1123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 1124 CGTCTCATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAACATC 1183 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || |||||||| || |||| || Sbjct 1184 CAGAAGGAGTCAACACTCCA-CTTGGTT 1210 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || ||||| || || |||||||| || ||||| || ||| Sbjct 1460 CAGATCTTCGTTAAAACCCTGACAGGCAAGACCATCACCCTGGAAGTGGAGCCATCTGAC 1519 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 1520 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAG 1579 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||| | |||||||| | || || |||| || ||| || Sbjct 1580 CGTCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 1639 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || ||||| || Sbjct 1640 CAGAAGGAGTCAACCCTTCATCTGGT 1665 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || |||||||| || || |||||||| || || || |||||| Sbjct 1232 CAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAAGTCGAGCCATCAGAC 1291 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 1292 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAACAG 1351 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 1352 CGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATC 1411 Query 178104 CAAAAAGA 178111 || || || Sbjct 1412 CAGAAGGA 1419 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 548 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCATCCGAC 607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 608 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAGCAG 667 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 668 CGTCTCATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 727 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || |||||||| Sbjct 728 CAGAAAGAGTCCACCCTTCATCTTGT 753 >seq1446 Length=3482675 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||||||||||||||| |||||| Sbjct 1542126 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCTTCAGAC 1542185 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| || || ||||| || |||||||| Sbjct 1542186 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 1542245 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 1542246 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 1542305 Query 178104 CAAAA 178108 || || Sbjct 1542306 CAGAA 1542310 >seq1001 Length=3733086 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 1254184 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCATCCGAC 1254243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 1254244 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 1254303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 1254304 CGTCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 1254363 Query 178104 CAAAAAGA 178111 || || || Sbjct 1254364 CAGAAGGA 1254371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203695604163752