Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq183 104 5e-17 seq17 100 6e-16 seq99 98.7 2e-15 seq259 96.9 7e-15 seq82 93.3 9e-14 seq267 91.5 3e-13 seq111 91.5 3e-13 seq83 91.5 3e-13 seq38 91.5 3e-13 seq101 89.7 1e-12 seq201 87.8 4e-12 >seq183 Length=676410 Score = 104 bits (114), Expect = 5e-17 Identities = 576/897 (64%), Gaps = 36/897 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 || || ||||| || | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 151379 TTGCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 151438 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| | ||| | | ||| | || | ||| |||| || |||| Sbjct 151439 ACAACAGAGGAAGTTGACATCTCTAAG--GACTTGGTGCATTGG---GAGAGTCTGAATG 151493 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| |||||||| | Sbjct 151494 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGATGGTATCG 151553 Query 229937 TGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAA 229995 | | || ||||| ||||| | |||| | || || ||| | |||| || Sbjct 151554 TCAATGAGAATCTGGCAGA-GAGATTTATTAAAGAGGTGCAGGTGACCGAGGTTAGGTGC 151612 Query 229996 TTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCT 230051 || |||| | ||| | |||| | ||| |||||||||||| || ||| | Sbjct 151613 TTCTATGGCTTCCAGATTGCCATTGA--GAA--CATCCATTCTGAAATGTACAGTCTCTT 151668 Query 230052 TATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAA 230111 |||||| | | || ||| || | | | || || |||| ||||| | Sbjct 151669 AATCGACACCTACGTGAAGGATCCGCATGAGAGAGAGCATCTATTCAATGCAATTGAGAC 151728 Query 230112 CATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGG-CTAGAACCTGGTAAA- 230169 ||| || || | || ||||| | ||||| | || ||| | || | | ||| Sbjct 151729 CATGCCTTGTGTAAAGAAGAAGGCTGACTGGGCCCTAAAGTGGACCGGAGACGAGAAAAG 151788 Query 230170 -TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 | |||| |||||| | || || | | ||| ||||| || | || |||||| Sbjct 151789 CACTTTTGGGGAGCGTGTGGTTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCCGGGGC 151848 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 ||| || || || ||| || |||| | ||| | ||||| || || | | || || Sbjct 151849 CTTCGCAGCAATTTTCTGGTTGAGGAAGAGAGGACTCATGCCCGGGCTGACTTTCTCAAA 151908 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA 230347 ||| | |||||| | ||||||||||| || || | | || | | |||||| || Sbjct 151909 TGAGCTGATCAGTAGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTTATG--GTC-- 151963 Query 230348 AGCT-CCAGAACAAGCTACC-ATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGT 230402 |||| || || ||| || | || || | ||| | || || || || || || Sbjct 151964 AGCTACCTGATCAATAAGCCTAGTC-AGGAGCTCATTCACCAGATTATCGACGATGCTGT 152022 Query 230403 TGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACG 230461 | | | || | |||||| | || ||| |||| ||| || ||||| ||||| Sbjct 152023 TAAGATTGAGCAAGAGTTCCTAACGGAAGCTCTTCC-TGTGAAGTTGATTGGGATGAATC 152081 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 || || ||| |||||||||||| || || || ||| | | | | | ||| | | Sbjct 152082 AAGACCTGATGAAACAGTACATCGAGTTTGTCGCAGACAGGCTGCTGGGAGAACTCGTGT 152141 Query 230522 ACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 | || ||| | |||||| |||||||||||| || |||||| |||||| || | Sbjct 152142 GC-AGTAAGCTTTACAACAGCGAGAACCCCTTTGATTTCATGGAGAACATTTCTCTGGAG 152200 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || |||||||||||||| || ||| | || | || || |||| | || |||||| Sbjct 152201 GGAAAGACCAACTTCTTTGAGAAGAGGGTGGGAGAGTACCAGAAGATGGGGGTGATG 152257 >seq17 Length=1299483 Score = 100 bits (110), Expect = 6e-16 Identities = 141/194 (73%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| ||||||| | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 1116451 TTCCCA-TCCAATACCGCGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 1116509 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| |||| | | ||| | | | ||| |||| || |||| Sbjct 1116510 ACAACGGAGGAAGTTGATCTCTCTAAG--GACTTGGAGAATTGG---GAGAGTCTGAATG 1116564 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || || ||||||||| |||| | ||||| |||| || ||||| | Sbjct 1116565 ACAACGAAAAACACTTTATCAAACACGTCCTGGCGTTTTTTGCAGCTAGTGACGGTATCG 1116624 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 1116625 TGAATGAAAATCTG 1116638 >seq99 Length=2803933 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 2309011 TTCCCA-TCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 2309069 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGAC 229878 || || ||||||||| ||| |||| | | | ||| |||| ||| |||||| Sbjct 2309070 ACAACGGAGGAAGTTGATCTCTCTAAAGACTTGGCGCATTGG---GAGAGACTGAATGAC 2309126 Query 229879 GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 229938 ||||| || |||||||||||| |||| | || || |||| || ||||| || Sbjct 2309127 AACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAGTC 2309186 Query 229939 ATGGAAAATCTG 229950 | ||||||||| Sbjct 2309187 AATGAAAATCTG 2309198 >seq259 Length=546029 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 378351 TTCCCA-TCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 378293 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| |||| | | ||| | | | ||| |||| ||| |||| Sbjct 378292 ACAACGGAGGAAGTTGATCTCTCTAAG--GACTTGGCGCATTGG---GAGAGACTGAATG 378238 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 378237 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAG 378178 Query 229937 TGATGGAAAATCTG 229950 | | ||||||||| Sbjct 378177 TCAATGAAAATCTG 378164 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 365946 TTCCCA-TCCAGTACCGCGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 365888 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || | ||||||| |||| | | ||| | | | ||| |||| || |||| Sbjct 365887 ACAACGGGGGAAGTTGATCTCTCTAAG--GACTTGGAGCATTGG---GAGAGTCTGAATG 365833 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 365832 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCG 365773 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 365772 TGAATGAAAATCTG 365759 >seq82 Length=929508 Score = 93.3 bits (102), Expect = 9e-14 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 24050 TTCCCA-TCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 23992 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGAC 229878 || || ||||||||| ||| | ||| | | | ||| |||| || |||||| Sbjct 23991 ACAACGGAGGAAGTTGATCTCTCCAAGGACTTGGAGCATTGG---GAGAGTCTGAATGAC 23935 Query 229879 GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 229938 ||||| || |||||||||||| |||| | || || |||| || ||||| || Sbjct 23934 AACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCGTC 23875 Query 229939 ATGGAAAATCTG 229950 | ||||||||| Sbjct 23874 AATGAAAATCTG 23863 >seq267 Length=502492 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| | |||||||||||||| || ||| | |||||| Sbjct 442659 TTCCCA-TCCAGTACCGCGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 442601 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| | ||| | | ||| | | | ||| |||| | |||| Sbjct 442600 ACAACGGAGGAAGTTGACGTCTCTAAG--GACTTGGAGCATTGG---GAGAGTTTGAATG 442546 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 442545 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCG 442486 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 442485 TGAATGAAAATCTG 442472 >seq111 Length=4255108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 3347657 TTCCCA-TCCAGTACCACGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 3347715 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| | ||| | | ||| | | | ||| |||| || |||| Sbjct 3347716 ACAACGGAGGAAGTTGACATCTCTAAG--GACTTAGAGCATTGG---GAGAGTCTGAATG 3347770 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 3347771 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCG 3347830 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 3347831 TGAATGAAAATCTG 3347844 >seq83 Length=3077414 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 || || ||||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 1922490 TTTCCGATCCAGTACCACGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 1922549 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| |||| | | ||| | | | ||| |||| || |||| Sbjct 1922550 ACAACGGAGGAAGTTGATCTCTCTAAG--GACTTGGAGCATTGG---GAGAGTCTGAATG 1922604 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 1922605 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCG 1922664 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 1922665 TGAATGAAAATCTG 1922678 >seq38 Length=4245309 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 4093443 TTCCCA-TCCAGTACCGCGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 4093385 Query 229819 ACCACTGAGGAAGT--TCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || |||||||| ||||| | | ||| ||| | ||| |||| || |||| Sbjct 4093384 ACAACGGAGGAAGTAGACCTCTCCAAG--GACTTCGAGCATTGG---GAGAGTCTGAATG 4093330 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 | ||||| || || ||||||||| |||| | ||||| |||| || ||||| | Sbjct 4093329 GCAACGAAAAACACTTTATCAAACACGTCCTGGCGTTTTTTGCAGCTAGTGACGGTATCG 4093270 Query 229937 TGATGGAAAATCTG 229950 ||| ||||||||| Sbjct 4093269 TGAATGAAAATCTG 4093256 >seq101 Length=3106575 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 2310339 TTCCCA-TCCAGTACCACGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 2310281 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGAC 229878 || || || |||||| |||| ||| | | | ||| |||| || |||||| Sbjct 2310280 ACAACGGATGAAGTTGATCTGTCTAAGGACTTAGAGCATTGG---GAGAGTCTGAATGAC 2310224 Query 229879 GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 229938 ||||| || |||||||||||| |||| | || || |||| || ||||| ||| Sbjct 2310223 AACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCGTG 2310164 Query 229939 ATGGAAAATCTG 229950 | ||||||||| Sbjct 2310163 AATGAAAATCTG 2310152 >seq201 Length=905327 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 |||||| |||| || | ||| || ||| |||||||||||||| || ||| | |||||| Sbjct 812840 TTCCCA-TCCAGTACCACGACATCTGGCGCATGTACAAGAAGGCCGTAGCATCATTCTGG 812898 Query 229819 ACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 || || ||||||||| |||| | | ||| | | | ||| |||| || |||| Sbjct 812899 ACAACGGAGGAAGTTGATCTCTCTAAG--GACTTGGCGCATTGG---GAGAGTCTGAATG 812953 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 || ||||| || |||||||||||| |||| | || || |||| || ||||| | Sbjct 812954 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCG 813013 Query 229937 TGATGGAAAATCTG 229950 | | ||||||||| Sbjct 813014 TTAATGAAAATCTG 813027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818605758740