Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq263 82.4 6e-11 >seq263 Length=525514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 102035 TTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 || |||||||| || |||||||||||||| || ||||| ||||| ||||| || || || Sbjct 162820 TTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCCTCC 162879 Query 102095 TCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATG 102154 || || | ||| | || || | || ||| || || || |||||||| ||| Sbjct 162880 TCGTAGTGGCTCAGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCAGATG 162939 Query 102155 TGCACGCCAGCTG-CTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAG 102213 || || | || | || || || |||| | ||| | || | || |||||| || || Sbjct 162940 TGTAC-CTTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAAGAG 162998 Query 102214 TTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 || || | || |||||||| || || | ||| ||||| Sbjct 162999 CTCCTCGGCTACCCCTCTCCAGAACACACGCTTTGTAGT 163037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249447705898