Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq30 123 2e-23 seq116 87.8 2e-12 seq6 82.4 6e-11 >seq30 Length=7729275 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | ||||||| ||| | ||||||||||| || ||||| ||||| Sbjct 7571849 GTTTCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 7571908 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| || | || |||||||| ||||| || | || || | ||||||||| Sbjct 7571909 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGG 7571968 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | |||||||||||| |||||| || || | | | || || ||||| Sbjct 7571969 GGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTC 7572028 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | ||| | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 7572029 CACTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7572079 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | ||||||||||| || ||||| ||||| | | Sbjct 7573221 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573280 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 7573281 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573340 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || || |||||| | Sbjct 7573341 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573400 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 7573401 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573447 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | ||||||||||| || ||||| ||||| | | Sbjct 7573449 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573508 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 7573509 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573568 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || || ||||| Sbjct 7573569 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACC 7573628 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | || || ||||| || ||||| Sbjct 7573629 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 7573675 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||| || || ||||| ||||| | | Sbjct 7572537 CCACCACGCAGACGCAGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572596 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 7572597 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7572656 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || || ||||| Sbjct 7572657 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATTGTGTCGGATGGCTCAACC 7572716 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 7572717 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 7572763 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||| || || ||||| ||||| | | Sbjct 7572765 CCACCACGCAGACGCAGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572824 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || ||||| || || || | || || | ||||||||| ||| Sbjct 7572825 AGGGTGCGGCCATCTTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572884 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || ||| ||||| Sbjct 7572885 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTCAACC 7572944 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | ||||||||||| || ||||| Sbjct 7572945 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACAAAGATCTGCAT 7572991 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||| |||||| || ||||| ||||| | | Sbjct 7572993 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 7573052 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 7573053 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573112 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || || |||||| | Sbjct 7573113 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573172 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 7573173 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573219 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | |||||||| || || ||||| ||||| | | Sbjct 7572309 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572368 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | ||||||||| ||| Sbjct 7572369 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572428 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || || ||||| Sbjct 7572429 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACC 7572488 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | |||||||| || || ||||| Sbjct 7572489 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | ||| ||||| || ||||| ||||| | | Sbjct 7572081 CCACCACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGAC 7572140 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| || | || || | ||||||||| ||| Sbjct 7572141 AGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572200 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | | || || ||||| Sbjct 7572201 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACC 7572260 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | |||||||| || || ||||| Sbjct 7572261 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572307 >seq116 Length=4760417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | ||||| | ||| | ||||| ||||| || ||||| ||||| | Sbjct 3277251 TCCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3277192 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||| ||| || || || | || || | ||||||||| ||| Sbjct 3277191 CAGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 3277132 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| |||||| || || | | | || ||| ||||| Sbjct 3277131 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAAC 3277072 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 3277071 CTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3277024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||| | ||||||||||| || ||||| ||||| | | Sbjct 3276110 CCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3276051 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||| ||| || || || | || || | ||||||||| ||| Sbjct 3276050 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 3275991 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || ||| ||||| Sbjct 3275990 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCAGACGGCTCAACC 3275931 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || || | || || ||||| || ||||| || Sbjct 3275930 TCAAGGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAGATCTGCATCTT 3275881 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | || |||||||| || ||||| ||||| | | Sbjct 3276338 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276279 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | ||||||||| || Sbjct 3276278 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276219 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | || || |||||| Sbjct 3276218 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCACC 3276159 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 3276158 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276112 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | ||||| | ||| | ||||| ||||| || ||||| ||||| | Sbjct 3279431 TCCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 3279372 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 3279371 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGG 3279312 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| |||||||| |||||| || || | | | || ||| ||||| Sbjct 3279311 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAAC 3279252 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || || || || || ||||| Sbjct 3279251 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3279204 >seq6 Length=9188263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | |||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 2515505 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2515446 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || | || |||||||| || || || | || || ||||||||||| Sbjct 2515445 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTC 2515393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257151778968