Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq116 113 4e-20 seq30 109 4e-19 >seq116 Length=4760417 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 3276320 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 3276261 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | ||||||||||| Sbjct 3276260 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 3276201 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||||||| | ||| || |||||| Sbjct 3276200 ATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCACCTCAAGGGTGATGGTCTTG 3276141 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 3276140 CCTGTCAGGGTCTTCACGAAGATCTGCATG 3276111 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 3276776 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 3276717 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| || | ||||| ||||| || || | ||||||||||| Sbjct 3276716 AACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 3276657 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||| | ||| || |||||| Sbjct 3276656 ATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCAACCTCAAGGGTGATGGTCTTG 3276597 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 3276596 CCTGTCAGGGTCTTCACGAAGATCTGCATG 3276567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| ||| ||| | || |||| Sbjct 3277003 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 3276944 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || || || ||||| || | ||||| ||||| || || | ||||||||||| | Sbjct 3276943 ACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGA 3276884 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| ||| ||||| | || || ||||||| Sbjct 3276883 TCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACCTCAAGAGTGATGGTCTTGC 3276824 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||| ||||| |||||| Sbjct 3276823 CTGTCAGGGTCTTCACGAAGATCTGCATG 3276795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| ||| ||| | || |||| || || || ||||| Sbjct 3277214 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAG 3277155 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||| || || | ||||||||||| || || ||| || | Sbjct 3277154 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 3277095 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| ||| ||||| | ||| || |||||||| ||||| |||||||| Sbjct 3277094 TCAATGGTGTCAGATGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 3277035 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 3277034 AAGATCTGCATG 3277023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| ||| ||| | || |||| Sbjct 3276091 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCA 3276032 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || || || ||||| || | ||||| ||||| || || | ||||||||||| | Sbjct 3276031 ACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA 3275972 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| ||| ||||| | ||| || ||||| | Sbjct 3275971 TCTTAGCCTTGACGTTCTCAATGGTGTCAGACGGCTCAACCTCAAGGGTGATGGTCTTCC 3275912 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || |||||||||||||| ||||| || Sbjct 3275911 CTGTGAGTGTCTTCACAAAGATCTGCATCTT 3275881 >seq30 Length=7729275 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || |||||||||||||| ||||||||||| ||| ||| | || ||| Sbjct 7573011 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 7573070 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| ||||| || || | || |||||||| Sbjct 7573071 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 7573130 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| |||||| || | ||| || |||||| Sbjct 7573131 ATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGTGATGGTCTTG 7573190 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 7573191 CCTGTGAGGGTCTTCACAAAGATCTGCATG 7573220 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || ||||| || || ||||| |||||||| ||||||||||| Sbjct 7572080 GCCACCACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGA 7572139 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || ||||| || || || ||||| || | ||||| ||||| || || Sbjct 7572140 CAGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGG 7572199 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| || || ||| || | | | |||| ||| || Sbjct 7572200 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAAC 7572259 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| ||||| || || || ||||| |||||| Sbjct 7572260 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073283638358