Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq232 100 6e-16 seq128 91.5 3e-13 >seq232 Length=1218932 Score = 100 bits (110), Expect = 6e-16 Identities = 293/443 (66%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| || ||||| || || || || || |||||| | ||||||||| Sbjct 37914 GTTGCGTTTGCTGCTGTGGAAGGGATATTTTTCTCCGGGGCCTTCGCAGCAATTTTCTGG 37973 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | | ||| || || || |||| || || || | ||| |||||| | || ||| ||| Sbjct 37974 TTGAGGAAAAGAGGACTTATGCCAGGGCTGACTTTCTCTAATGAGCTGATCAGTAGAGAC 38033 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT-ACCCC 102096 |||||||| || ||||||||| || | || | | | | || || | || Sbjct 38034 GAAGGTCTGCACACCGACTTTGCCTGTCTTATGGTCAGCTA---CCTGGTCAATAAGCCT 38090 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | || || | |||| | ||| || || || || ||||| ||||| || || Sbjct 38091 AGTGAG-GAGCGCATTCACCAGATTATCGACGATGCTGTTAAGATTGAGCAAGAGTTCCT 38149 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG--TTGATGAGCCAGTAC 102214 || | | || ||||| || | | || ||||| |||| |||||| |||||| Sbjct 38150 GACGGAAGCTCTTCCTGTGAAGCTGATTGGGATGAA--TCAAGACCTGATGAAACAGTAC 38207 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAA---ATGGGACTAGAAAAGCACTATAAT 102271 ||||| ||||| ||||||| || ||| ||| ||| | || |||| || || Sbjct 38208 ATTGAGTTTGTCGCAGATAGGCTGCTGGGAGAACTCATGTG--CAG-TAAGCTTTACAAC 38264 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 |||||||| |||||||| || ||||| || ||| ||||||||||| ||| Sbjct 38265 AGCGAGAACCCCTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTT 38324 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || |||| || | |||||||| Sbjct 38325 GAGAAGAAGGTGGGAGAGTATCA 38347 >seq128 Length=2759376 Score = 91.5 bits (100), Expect = 3e-13 Identities = 291/443 (66%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || ||||| || || || || || |||||| | ||||||||| Sbjct 178750 GTTGCCTTTGCCGCTGTGGAAGGGATATTTTTCTCCGGGGCCTTCGCAGCAATTTTCTGG 178691 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | | ||| || || || |||| || || || | ||| |||||| | || ||| ||| Sbjct 178690 TTGAGGAAAAGAGGACTTATGCCAGGGCTGACTTTCTCTAATGAGCTGATCAGTAGAGAC 178631 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT-ACCCC 102096 || ||||| || ||||||||| || | || | | | | | | || | || Sbjct 178630 GAGGGTCTGCACACCGACTTTGCCTGTCTTATGGTCAGCTA---TCTGATCAATAAGCCT 178574 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | || || | |||| | ||| || || || || ||||| ||||| || || Sbjct 178573 AGTGAG-GATCGCATTCACCAGATTATCGACGATGCTGTTAAGATTGAGCAAGAGTTCCT 178515 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG--TTGATGAGCCAGTAC 102214 || | | || ||||| || | | || ||||| |||| |||||| |||||| Sbjct 178514 GACGGAAGCTCTTCCTGTGAAGCTGATTGGGATGAA--TCAAGACCTGATGAAACAGTAC 178457 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAA---ATGGGACTAGAAAAGCACTATAAT 102271 || || ||||| ||||||| || ||| ||| ||| | || |||| || || Sbjct 178456 ATCGAGTTTGTCGCAGATAGGCTGCTGGGAGAACTCATGTG--CAG-TAAGCTTTACAAC 178400 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 |||||||| |||||||| || ||||| || ||| ||||||||||| ||| Sbjct 178399 AGCGAGAACCCCTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTT 178340 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || |||| || | |||||||| Sbjct 178339 GAGAAGAAGGTGGGAGAGTATCA 178317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578953740090