Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq151 98.7 7e-16 seq154 96.9 2e-15 seq259 91.5 1e-13 >seq151 Length=1829068 Score = 98.7 bits (108), Expect = 7e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 22778 TTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGG 22837 |||| || || ||||| || || |||||||||||||| | || ||||| || || Sbjct 1482648 TTTCAGGTTCCTTTGCTGCTATCTTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGTCTGA 1482707 Query 22838 CGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGC 22897 |||| ||||||||| |||| ||| | ||||| ||| | ||||||||||| || || || Sbjct 1482708 CGTTCTCCAACGAGCTGATCAGCAGAGACGAGGGTTTGCACTGTGACTTCGCCTGCCTGA 1482767 Query 22898 TGTTTAGGCAAATGGCAAACAAACCGTGTCAGGA 22931 |||| || || ||| ||||| || || |||| Sbjct 1482768 TGTTCAGTCACCTGGTGAACAAGCCCAGTGAGGA 1482801 >seq154 Length=781518 Score = 96.9 bits (106), Expect = 2e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||| || || || || ||||| | || || || || || || ||||| ||||||||| Sbjct 49995 GCCTTCGCAGCCGTGGAGGGCGTGTTCTTCTCAGGCTCGTTCGCTGCCATCTTCTGGCTG 50054 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||| || || | || || ||||| | ||||| |||||||| Sbjct 50055 AAGAAACGCGGCCTGATGCCCGGCCTGACCTTCTCTAACGAACTAATTAGTCGTGACGAG 50114 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 || | ||||| || ||||| || || |||||| ||| Sbjct 50115 GGCTTGCACTGCGAGTTTGCCTGCCTGTTGTTTAAGCA 50152 >seq259 Length=546029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 272/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || ||||| ||||| ||||| | | || || ||| | || || || || |||||| || Sbjct 365515 GCGTTTGCCGCTGTGGAAGGGATATTTTTCTCCGGGGCCTTCGCAGCAATTTTCTGGTTG 365456 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 | |||| | |||||||||||| || | || ||||| ||| |||| || | ||||| Sbjct 365455 AGGAAAAGAGGACTCATGCCAGGGCTGACTTTCTCCAATGAGCTGATCAGTAGAGACGAG 365396 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 ||||| ||| |||||||| ||| | || | || | || || || || || || Sbjct 365395 GGTCTGCACGCCGACTTTGCCTGTCTTATGGTCAGCTATCTGATCAATAAGCCTAGTGAG 365336 Query 22930 GA-CG-ATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAG 22987 || || || ||| || || || ||||| ||| | |||||| ||| | | Sbjct 365335 GAGCGCATTCAC--CAGATTATTGACGATGCTGTTAAGATTGAGCAAAAGTTCCTGACGG 365278 Query 22988 AGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAGT 23047 | || || || |||| |||||| ||| |||| || |||||| ||| Sbjct 365277 AAGCTCTTCCCGTGAGGCTGATTGGGATGAATCAAGACCTGATGAAACAGTACATCGAGT 365218 Query 23048 TTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCA--AAGATGTATAACGTTGCCAA 23105 |||| |||||| | ||||| | | || | |||| ||| | || ||| | || Sbjct 365217 TTGTCGCAGATAGGCTGCTGGGGGAACT--CATGTGCAGTAAGCTTTACAACAGCGAGAA 365160 Query 23106 TCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || ||||| |||||||| |||||| | || || || || ||||||||||| Sbjct 365159 CCCCTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGA 365106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231872044394