Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq30 87.8 1e-12 >seq30 Length=7729275 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| |||| ||||||||||| || | ||||| || || Sbjct 7572992 GCCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 7573051 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| || ||||||||||| || | ||||| || || | || Sbjct 7573052 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573111 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||| | ||| ||||| | ||| || Sbjct 7573112 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCAC 7573171 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || || |||||||| || ||||| Sbjct 7573172 TTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573219 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||||||||| ||| |||||| || | ||||| || || Sbjct 7573220 GCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 7573279 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| || ||||||||||| || | ||||| || || | || Sbjct 7573280 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573339 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||| | ||| ||||| | ||| || Sbjct 7573340 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCAC 7573399 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || || |||||||| || ||||| Sbjct 7573400 TTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573447 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||||||||| ||| |||||| || | ||||| || || Sbjct 7573448 GCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 7573507 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| || ||||||||||| || | ||||| || || | || Sbjct 7573508 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573567 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||| | | | ||||||| | ||| || Sbjct 7573568 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAAC 7573627 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || |||||||| || ||||| Sbjct 7573628 CTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 7573675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367750119084