Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq263 113 3e-20 >seq263 Length=525514 Score = 113 bits (124), Expect = 3e-20 Identities = 116/148 (78%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| || ||||| |||||||||||||||| |||||||| || | |||| || Sbjct 160649 GCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAAGGGTACGCCAAGCCCCGTG 160708 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACT-GAC 25624 | | ||||| | |||||| ||||||||||| || ||| ||| | |||||| |||| ||| Sbjct 160709 T-CTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTTACACACGTAGAACTGGAC 160767 Query 25625 ACATGGTGTAGCACGGAGGAAGAGCTAT 25652 | | || || ||| || || || || || Sbjct 160768 A-AAGGCGTGGCAGGGGGGCAGCGCCAT 160794 Score = 100 bits (110), Expect = 2e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 25777 TCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCA 25836 ||| |||| ||||| || |||| |||||||||||| || || || || || ||||| || Sbjct 162817 TCCTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCC 162876 Query 25837 TCTTCCCTGT-GCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCA 25895 || || || |||| | || | ||| |||| || |||||||| || ||||| ||||| Sbjct 162877 TCCTCGTAGTGGCTC-AGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCA 162935 Query 25896 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 25955 ||| | |||| || |||||||| || ||| || || | || | ||| ||||| | Sbjct 162936 GATGTGTACCTTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAA 162995 Query 25956 CAGCTCC 25962 |||||| Sbjct 162996 GAGCTCC 163002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340135950120054