Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq99 93.3 2e-14 seq22 87.8 9e-13 seq21 84.2 1e-11 seq191 82.4 4e-11 seq86 82.4 4e-11 >seq99 Length=2803933 Score = 93.3 bits (102), Expect = 2e-14 Identities = 77/93 (83%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCC--CATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||| ||| |||||||| || | || ||||||| ||||||||||||||| | Sbjct 284533 TTAACAAAACATCTAATTGGCCAGCACGG--GGGTCGAACCCGCGACCTTCGCGTTATCA 284590 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||| |||| Sbjct 284591 GCACGACGCTCTAACCAACTGAGCTAACCGGCC 284623 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 283281 GGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 283340 Query 11528 CC 11529 || Sbjct 283341 CC 283342 Score = 87.8 bits (96), Expect = 9e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 || |||||||| | |||||||||| |||| |||||||||||||||||||||||| Sbjct 286319 TCGAATTGGCCAGTACGGGGATCGAACCCGCGACATTCGCGTTATTAGCACGACGCTCTA 286378 Query 11510 ACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 286379 ACCAACTGAGCTAACCGGCC 286398 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| ||||||||||||||| |||||||| |||||||||||||| || Sbjct 282759 GGATCGAACCCGCGACATTCGCGTTATTAGCAAGACGCTCTAACCAACTGAGCTAACCGG 282818 Query 11528 CC 11529 || Sbjct 282819 CC 282820 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 288919 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 288860 Query 11528 CC 11529 || Sbjct 288859 CC 288858 >seq22 Length=2626881 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| |||| || |||||| | | ||| ||||||| ||||||||||||||| Sbjct 1066293 AGAAATAAAAAAATATAGTGTTGGCC-AGCACAGGGTCGAACCCGCGACCTTCGCGTTAT 1066351 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAA 11523 ||||||||||||| |||||||||||||| Sbjct 1066352 CAGCACGACGCTCTAACCAACTGAGCTAA 1066380 >seq21 Length=10574652 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/88 (82%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCC--CATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | |||||| || | || ||||||| ||||||||||||||| |||||| Sbjct 7773262 AAAAAATTGAGTTGGCCAGCACGG--GGGTCGAACCCGCGACCTTCGCGTTATCAGCACG 7773319 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 7773320 ACGCTCTAACCAACTGAGCTAACCGGCC 7773347 >seq191 Length=1703199 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 1096100 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 1096159 Query 11528 CC 11529 || Sbjct 1096160 CC 1096161 >seq86 Length=240524 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 209947 GGGTCGAACCCGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 210006 Query 11528 CC 11529 || Sbjct 210007 CC 210008 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489931604248